Factsheet for TraesCS1A01G354400.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, unclear, golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 19786127
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1A01G373200.1
TraesCS1B01G143000.1
TraesCS1B01G393400.2
TraesCS1D01G130300.1
TraesCS1D01G380000.2
TraesCS2A01G240200.1
TraesCS2A01G282200.1
TraesCS2B01G257800.1
TraesCS2B01G299400.1
TraesCS2D01G237900.1
TraesCS2D01G281000.1
TraesCS3A01G104300.1
TraesCS3A01G150300.2
TraesCS3A01G260500.1
TraesCS3B01G122600.1
TraesCS3B01G177300.1
TraesCS3B01G293600.1
TraesCS3D01G106500.1
TraesCS3D01G158200.1
TraesCS3D01G260700.1
TraesCS7A01G134600.1
TraesCS7B01G035800.1
TraesCS7D01G134000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	TraesCS1A01G373200.1	AT1G17970.1	21798944
AT3G09630.1	TraesCS1B01G393400.2	AT1G17970.1	21798944
AT3G09630.1	TraesCS1D01G380000.2	AT1G17970.1	21798944
AT3G09630.1	TraesCS3A01G260500.1	AT1G17970.1	21798944
AT3G09630.1	TraesCS3B01G293600.1	AT1G17970.1	21798944
AT3G09630.1	TraesCS3D01G260700.1	AT1G17970.1	21798944
AT3G09630.1	TraesCS1A01G124100.1	AT3G13720.1	21798944
AT3G09630.1	TraesCS1B01G143000.1	AT3G13720.1	21798944
AT3G09630.1	TraesCS1D01G130300.1	AT3G13720.1	21798944
AT3G09630.1	TraesCS3A01G104300.1	AT3G13720.1	21798944
AT3G09630.1	TraesCS3B01G122600.1	AT3G13720.1	21798944
AT3G09630.1	TraesCS3D01G106500.1	AT3G13720.1	21798944
AT3G09630.1	TraesCS2A01G240200.1	AT3G22960.1	21798944
AT3G09630.1	TraesCS2B01G257800.1	AT3G22960.1	21798944
AT3G09630.1	TraesCS2D01G237900.1	AT3G22960.1	21798944
AT5G02870.1	TraesCS2A01G282200.1	AT5G22310.1	21798944
AT5G02870.1	TraesCS2B01G299400.1	AT5G22310.1	21798944
AT5G02870.1	TraesCS2D01G281000.1	AT5G22310.1	21798944
AT5G02870.1	TraesCS7A01G134600.1	AT5G22310.1	21798944
AT5G02870.1	TraesCS7B01G035800.1	AT5G22310.1	21798944
AT5G02870.1	TraesCS7D01G134000.1	AT5G22310.1	21798944
AT5G02870.1	TraesCS3A01G150300.2	AT5G58720.1	21798944
AT5G02870.1	TraesCS3B01G177300.1	AT5G58720.1	21798944
AT5G02870.1	TraesCS3D01G158200.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	97.77	97.77
TraesCS1D01G264200.1	Wheat	cytosol	97.52	97.52
TraesCS5A01G439100.2	Wheat	cytosol, unclear	97.28	97.28
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	96.78	95.83
HORVU4Hr1G075710.1	Barley	mitochondrion	96.78	92.22
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	84.65	84.65
Zm00001d013076_P001	Maize	plasma membrane	84.16	84.16
EER90739	Sorghum	cytosol, plastid	83.66	83.66
Os03t0796501-00	Rice	nucleus	83.66	83.66
TraesCS2A01G253600.1	Wheat	cytosol	81.68	81.89
GSMUA_Achr5P03060_001	Banana	cytosol	74.5	74.14
GSMUA_Achr4P21120_001	Banana	cytosol	73.76	73.4
AT3G09630.1	Thale cress	cytosol	72.28	71.92
CDY44721	Canola	cytosol, extracellular	72.28	71.92
Bra009560.1-P	Field mustard	cytosol	72.28	71.92
CDX70339	Canola	cytosol	72.03	71.67
AT5G02870.1	Thale cress	cytosol	72.03	71.5
CDY10418	Canola	cytosol	72.03	71.5
GSMUA_Achr4P28500_001	Banana	cytosol	19.8	71.43
CDY41596	Canola	cytosol	71.78	71.43
CDX80842	Canola	cytosol	71.53	71.18
CDY41301	Canola	cytosol	68.81	71.1
CDY22192	Canola	cytosol	68.81	71.1
Bra029780.1-P	Field mustard	cytosol	71.29	70.94
Bra005749.1-P	Field mustard	cytosol	71.04	70.69
CDX73989	Canola	cytosol	70.79	70.44
PGSC0003DMT400028707	Potato	cytosol	68.07	70.33
Bra001302.1-P	Field mustard	cytosol	70.54	70.2
Solyc09g007250.2.1	Tomato	nucleus	70.3	69.95
CDY11231	Canola	cytosol	67.82	69.9
PGSC0003DMT400071725	Potato	cytosol	70.05	69.7
PGSC0003DMT400045381	Potato	cytosol	69.8	69.29
Solyc10g084350.1.1	Tomato	nucleus	34.16	66.99
Bra034075.1-P	Field mustard	cytosol	64.36	66.84
GSMUA_Achr7P01370_001	Banana	cytosol	10.4	66.67
GSMUA_Achr4P28490_001	Banana	nucleus	10.15	65.08
Solyc10g086010.1.1	Tomato	extracellular	69.31	64.37
GSMUA_Achr2P12650_001	Banana	plastid	48.27	48.63
Bra006658.1-P	Field mustard	plastid	9.9	40.4
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	69.06	35.82
VIT_02s0087g00870.t01	Wine grape	cytosol	10.89	35.77
KRG89783	Soybean	plastid	3.71	15.62

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	PFAM:PF00573
PFAM:PF14374	ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e
InterPro:Ribosomal_L4/L1e_euk/arc_CS	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	EnsemblPlantsGene:TraesCS1A01G354400	EnsemblPlants:TraesCS1A01G354400.1	SEG:seg

Description

No Description!

Coordinates

chr1A:-:537354302..537356883

Molecular Weight (calculated)

44309.9 Da

IEP (calculated)

11.282

GRAVY (calculated)

-0.353

Length

404 amino acids

Sequence
(BLAST)

001: MATTARPLVS VKALDGDMPT DAAGVPMPHV MKAPIRPDVI TFVHRLVSCN SRQPYAVSRK AGHQTSAESW GTGRAVSRIP RVGGGGTHRS GQGAFGNMCR
101: GGRMFAPTRI WRKWHRRVNI RLRRVAVASA LAATAVPAIV TARGHRIESV PEFPLVVSDS AEGIEKTSQA VKVLKQLGAY ADADKAKDSV GIRPGKGKMR
201: NRRYINRKGP LIVYATEGSK IVKAFRNLPG VDVANVERLN LLDLAPGGHL GRFVIWTESA FKKLDEVYGS FEASSSKKKG FVLPRPKMTN ADLGRLINSD
301: EVQSVVKPIN KEVKRREARK NPLKNAAAVL KLNPYFGTAR RMAVLAEAAR VKARKDKINS KRTKLSVEEA SKIKAAGKAW YQTMISDSDY MEFDVFSKWL
401: GVSQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.