Factsheet for Bra029780.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001896.1-P
Bra016574.1-P
Bra021502.1-P
Bra021503.1-P
Bra023780.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	Bra016574.1-P	AT1G17970.1	21798944
AT3G09630.1	Bra021502.1-P	AT3G13720.1	21798944
AT3G09630.1	Bra021503.1-P	AT3G13720.1	21798944
AT3G09630.1	Bra001896.1-P	AT3G22960.1	21798944
AT3G09630.1	Bra023780.1-P	AT3G22960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44721	Canola	cytosol, extracellular	98.52	98.52
Bra009560.1-P	Field mustard	cytosol	93.35	93.35
Bra005749.1-P	Field mustard	cytosol	93.1	93.1
AT3G09630.1	Thale cress	cytosol	93.1	93.1
Bra001302.1-P	Field mustard	cytosol	92.86	92.86
Bra034075.1-P	Field mustard	cytosol	86.21	89.97
Solyc10g084350.1.1	Tomato	nucleus	41.63	82.04
KRH19796	Soybean	nucleus	80.79	80.99
KRH32387	Soybean	nucleus	80.54	80.74
PGSC0003DMT400028707	Potato	cytosol	76.35	79.28
GSMUA_Achr4P21120_001	Banana	cytosol	77.83	77.83
PGSC0003DMT400045381	Potato	cytosol	77.83	77.64
GSMUA_Achr5P03060_001	Banana	cytosol	76.85	76.85
PGSC0003DMT400071725	Potato	cytosol	76.85	76.85
Solyc09g007250.2.1	Tomato	nucleus	76.6	76.6
TraesCS1D01G264200.1	Wheat	cytosol	72.91	73.27
GSMUA_Achr4P28500_001	Banana	cytosol	20.2	73.21
TraesCS5A01G439100.2	Wheat	cytosol, unclear	72.66	73.02
TraesCS1B01G274700.2	Wheat	cytosol, nucleus	72.66	73.02
TraesCS5B01G442100.1	Wheat	cytosol, golgi, nucleus, unclear	72.66	73.02
GSMUA_Achr7P01370_001	Banana	cytosol	11.33	73.02
GSMUA_Achr4P28490_001	Banana	nucleus	11.33	73.02
TraesCS5D01G446300.2	Wheat	cytosol	72.41	72.77
Solyc10g086010.1.1	Tomato	extracellular	77.83	72.64
Zm00001d007824_P001	Maize	plasma membrane	72.17	72.52
KXG34535	Sorghum	cytosol	71.43	71.78
EER90739	Sorghum	cytosol, plastid	71.43	71.78
HORVU5Hr1G105870.1	Barley	cytosol, plasma membrane	71.92	71.57
TraesCS1A01G354400.1	Wheat	cytosol, extracellular, golgi, unclear	70.94	71.29
Zm00001d013076_P001	Maize	plasma membrane	70.94	71.29
KRH67633	Soybean	endoplasmic reticulum, mitochondrion	69.7	71.28
Zm00001d018957_P001	Maize	plasma membrane	70.69	71.22
KRG95915	Soybean	endoplasmic reticulum	75.37	71.16
Zm00001d034440_P001	Maize	mitochondrion, plasma membrane	70.44	70.79
Os07t0180900-01	Rice	nucleus, plasma membrane	70.2	70.37
Os03t0796501-00	Rice	nucleus	68.72	69.06
TraesCS2A01G253600.1	Wheat	cytosol	68.23	68.73
HORVU4Hr1G075710.1	Barley	mitochondrion	71.18	68.16
Bra006658.1-P	Field mustard	plastid	14.53	59.6
KRG96019	Soybean	endoplasmic reticulum, extracellular	12.56	56.67
VIT_15s0045g00110.t01	Wine grape	cytosol	28.57	52.97
GSMUA_Achr2P12650_001	Banana	plastid	49.75	50.37
VIT_00s0208g00020.t01	Wine grape	cytosol	28.08	29.38

Protein Annotations

MapMan:17.1.2.1.2	Gene3D:3.40.1370.10	EnsemblPlantsGene:Bra029780	EnsemblPlants:Bra029780.1	EnsemblPlants:Bra029780.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	UniProt:M4ELW0	PFAM:PF00573	PFAM:PF14374
ScanProsite:PS00939	PANTHER:PTHR19431	PANTHER:PTHR19431:SF1	InterPro:Ribos_L4_C_dom	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4/L1e_euk/arc_CS
InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI0002547B33	SEG:seg	:	:

Description

AT3G09630 (E=1e-207) | 60S ribosomal protein L4/L1 (RPL4A)

Coordinates

chrA05:-:22299480..22301087

Molecular Weight (calculated)

44745.8 Da

IEP (calculated)

10.936

GRAVY (calculated)

-0.350

Length

406 amino acids

Sequence
(BLAST)

001: MATSAARPLV TIQGLDGDMT TDQSFTIVLP DVMAAPVRPD IVSFVHAQIP NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRKWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEGVEKTA AAIKVLKQIG AYDDAEKAKD SIGIRSGVGK
201: MRNRRYICRK VPLVVYGTEG SKIVKSFRNL PGVELCHVER LNLLKLAPGG HLGRFVVWTK SAFEKLEGIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEVQSVVKP IKKDAKRAVM KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL TKKRKTVTKE ESLAIKSAGK AWYQTMISDS DYTEFDNFTK
401: WLGASQ

Best Arabidopsis Sequence Match ( AT3G09630.1 )
(BLAST)

001: MAAAAARPLV TIQTLDGDMS TDQSSTVVLP DVMTAPVRPD IVNFVHAQIS NNSRQPYAVS KKAGHQTSAE SWGTGRAVSR IPRVPGGGTH RAGQAAFGNM
101: CRGGRMFAPT KIWRRWHRRV NVNMKRHAIV SAIAATAVPA LVMARGHKIE NVPEMPLVVS DSAEAVEKTS AAIKVLKQIG AYDDAEKAKN SIGIRPGKGK
201: MRNRRYISRK GPLVVYGTEG SKIVKAFRNL PGVELCHVER LNLLKLAPGG HLGRFVIWTK SAFEKLESIY GSFEKPSEKK KGYVLPRAKM VNADLARIIN
301: SDEIQSVVNP IKKDAKRAVL KKNPLKNLNV MLKLNPYAKT AKRMSLLAEA QRVKAKKEKL AKKRKTVTKE EALAIKAAGK SWYKTMISDS DYTEFDNFTK
401: WLGASQ

Arabidopsis Description

RPL4A60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.