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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 3
  • cytosol 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:cytosol
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002620.1-P
Bra002925.1-P
Bra003923.1-P
Bra010452.1-P
Bra012353.1-P
Bra012661.1-P
Bra012908.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra014355.1-P
Bra021502.1-P
Bra021503.1-P
Bra021674.1-P
Bra022817.1-P
Bra022985.1-P
Bra024556.1-P
Bra024951.1-P
Bra028142.1-P
Bra028632.1-P
Bra030537.1-P
Bra032216.1-P
Bra033412.1-P
Bra037983.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13720.1 Bra030537.1-P AT1G03600.1 21798944
AT3G13720.1 Bra033412.1-P AT1G03600.1 21798944
AT3G13720.1 Bra012353.1-P AT1G22990.1 21798944
AT3G13720.1 Bra024556.1-P AT1G22990.1 21798944
AT3G13720.1 Bra014069.1-P AT1G47260.1 21798944
AT3G13720.1 Bra032216.1-P AT1G47260.1 21798944
AT3G13720.1 Bra014355.1-P AT1G55190.1 21798944
AT3G13720.1 Bra037983.1-P AT1G55190.1 21798944
AT3G13720.1 Bra003923.1-P AT1G71480.1 21798944
AT3G13720.1 Bra021674.1-P AT2G30880.1 21798944
AT3G13720.1 Bra022817.1-P AT2G30880.1 21798944
AT3G13720.1 Bra022985.1-P AT2G34690.1 18845362
AT3G13720.1 Bra021502.1-P AT3G13720.1 21798944
AT3G13720.1 Bra021503.1-P AT3G13720.1 21798944
AT3G13720.1 Bra012908.1-P AT3G50110.1 21798944
AT3G13720.1 Bra012661.1-P AT4G17486.1 21798944
AT3G13720.1 Bra010452.1-P AT4G25660.1 21798944
AT3G13720.1 Bra013908.1-P AT4G25660.1 21798944
AT3G13720.1 Bra013910.1-P AT4G25660.1 21798944
AT3G13720.1 Bra010452.1-P AT4G25680.1 21798944
AT3G13720.1 Bra013908.1-P AT4G25680.1 21798944
AT3G13720.1 Bra013910.1-P AT4G25680.1 21798944
AT3G13720.1 Bra028632.1-P AT5G09450.1 21798944
AT3G13720.1 Bra028142.1-P AT5G37680.1 21798944
AT3G13720.1 Bra024951.1-P AT5G47310.1 21798944
AT3G13720.1 Bra002925.1-P AT5G55200.1 21798944
AT3G13720.1 Bra002620.1-P AT5G58750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51734 Canola plastid 96.63 96.17
Bra021502.1-P Field mustard plastid 59.13 57.48
AT3G13720.1 Thale cress cytosol, plasma membrane, plastid 46.15 51.06
Bra027406.1-P Field mustard plasma membrane 39.9 45.86
Solyc03g121460.1.1 Tomato plastid 38.46 43.96
PGSC0003DMT400006409 Potato plasma membrane 37.5 42.86
Bra021504.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 37.02 42.31
KRH23330 Soybean plastid 34.62 39.13
KRH10001 Soybean mitochondrion 34.62 39.13
VIT_09s0002g02400.t01 Wine grape plastid 36.06 38.86
GSMUA_Achr7P09070_001 Banana plastid 35.1 38.83
KRH47141 Soybean plasma membrane 31.73 37.08
Bra014355.1-P Field mustard cytosol, plasma membrane, plastid 33.65 37.04
Bra037983.1-P Field mustard extracellular, plasma membrane 24.04 35.71
KRH44167 Soybean plasma membrane 29.81 35.23
Zm00001d039455_P002 Maize extracellular, mitochondrion 31.25 33.68
TraesCS3A01G104300.1 Wheat plastid 30.29 32.98
TraesCS3B01G122600.1 Wheat plastid 29.81 32.63
TraesCS3D01G106500.1 Wheat plastid 29.81 32.63
EES00126 Sorghum plastid 29.81 32.29
Os05t0200280-01 Rice plasma membrane 26.92 29.02
Os01t0196500-01 Rice plastid 27.88 28.86
Bra025954.1-P Field mustard plasma membrane 25.48 28.8
TraesCS1D01G130300.1 Wheat plastid 26.44 28.8
TraesCS1A01G124100.1 Wheat plastid 26.44 28.8
Bra031001.1-P Field mustard plasma membrane 25.0 28.73
TraesCS1B01G143000.1 Wheat plastid 26.44 28.65
Bra018602.1-P Field mustard plastid 26.92 26.92
Bra011125.1-P Field mustard mitochondrion 22.6 26.86
Bra007796.1-P Field mustard plastid 10.58 25.58
HORVU1Hr1G028520.1 Barley plastid 26.44 25.46
Bra009110.1-P Field mustard plastid 25.96 25.12
HORVU3Hr1G018940.2 Barley plastid 30.77 25.1
Bra017037.1-P Field mustard plastid 10.1 24.42
Bra030561.1-P Field mustard plasma membrane 20.67 24.16
Bra002833.1-P Field mustard plastid 21.15 23.78
Bra007216.1-P Field mustard plastid 22.6 23.15
Zm00001d037747_P001 Maize plastid 20.67 22.87
Bra004965.1-P Field mustard plastid 23.08 22.54
OQU77594 Sorghum plastid 21.15 22.45
Bra000056.1-P Field mustard plastid 23.08 21.62
Bra005924.1-P Field mustard plastid 22.6 21.56
Bra038009.1-P Field mustard cytosol, endoplasmic reticulum, plasma membrane 19.23 21.51
Bra003228.1-P Field mustard plastid 21.63 21.33
Bra005112.1-P Field mustard plastid 16.83 20.83
Protein Annotations
EnsemblPlants:Bra021503.1EnsemblPlants:Bra021503.1-PEnsemblPlantsGene:Bra021503GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF2PFAM:PF03208SEG:segTMHMM:TMhelix
UniParc:UPI000254472EUniProt:M4DYA7MapMan:22.8.4.3.2:::
Description
AT3G13720 (E=2e-042) PRA1.F3, PRA8 | PRA8
Coordinates
chrA01:+:24915224..24915850
Molecular Weight (calculated)
23760.4 Da
IEP (calculated)
8.451
GRAVY (calculated)
0.512
Length
208 amino acids
Sequence
(BLAST)
001: MTNYGAIPTS SHASTSPVVD VESLSSDNQR TKPARAMPRR PLGVMLDVHA IGLPRSVSDA SSRIKTNSNY FRMNYSIFLS IIYLIVIYSG LIKHPVSLIA
101: FTVLVSIYIF FFNLQYHEPV ELFHYHINSW TFLIVKICLM LLAVLLLLWT KETYSFRWPL LIGCIVILIH TVVRKTEDLF LDEEAVATTE TYWNRGLILA
201: LFLQICLG
Best Arabidopsis Sequence Match ( AT3G13720.1 )
(BLAST)
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
Arabidopsis Description
PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.