Factsheet for Bra007216.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27245	Canola	plastid	100.0	100.0
AT3G56110.1	Thale cress	plastid	92.12	89.47
Bra003228.1-P	Field mustard	plastid	92.61	89.1
Bra017037.1-P	Field mustard	plastid	37.44	88.37
Bra007796.1-P	Field mustard	plastid	36.95	87.21
Bra004965.1-P	Field mustard	plastid	79.8	76.06
Bra009110.1-P	Field mustard	plastid	69.46	65.58
Solyc06g050570.1.1	Tomato	plastid	68.47	63.76
PGSC0003DMT400061546	Potato	plastid	67.98	63.3
KRH73238	Soybean	plastid	67.0	63.26
KRH14895	Soybean	plastid	66.01	62.33
KRH54835	Soybean	endoplasmic reticulum, extracellular, vacuole	33.0	62.04
Bra000056.1-P	Field mustard	plastid	61.58	56.31
Bra005924.1-P	Field mustard	plastid	53.69	50.0
Bra005112.1-P	Field mustard	plastid	39.41	47.62
Bra037983.1-P	Field mustard	extracellular, plasma membrane	28.08	40.71
Bra027406.1-P	Field mustard	plasma membrane	33.99	38.12
Bra021504.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	33.99	37.91
Bra014355.1-P	Field mustard	cytosol, plasma membrane, plastid	32.51	34.92
Bra031001.1-P	Field mustard	plasma membrane	27.59	30.94
Bra011125.1-P	Field mustard	mitochondrion	26.6	30.86
Bra002833.1-P	Field mustard	plastid	28.08	30.81
Bra025954.1-P	Field mustard	plasma membrane	27.59	30.43
Bra038009.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	27.09	29.57
Bra030561.1-P	Field mustard	plasma membrane	25.62	29.21
Bra018602.1-P	Field mustard	plastid	29.06	28.37
Bra021502.1-P	Field mustard	plastid	24.14	22.9
Bra021503.1-P	Field mustard	plastid	23.15	22.6

Protein Annotations

EnsemblPlants:Bra007216.1	EnsemblPlants:Bra007216.1-P	EnsemblPlantsGene:Bra007216	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002542B19	UniProt:M4CSM4	MapMan:22.8.4.3.2	:	:	:

Description

AT3G56110 (E=2e-096) PRA1.B1 | PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1)

Coordinates

chrA09:-:28039834..28040445

Molecular Weight (calculated)

21996.9 Da

IEP (calculated)

8.749

GRAVY (calculated)

0.497

Length

203 amino acids

Sequence
(BLAST)

001: MASPPTIPVT NQQAAQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWAEL VDRSSMARPE SLTDALSRIR KNLAYFKVNY AAIVSLVLAF SLFSHPLSLL
101: VLVGLLAGWM FLYVFRPADQ PLVVFGRTFS DRETLLGLAL CTIVVVFMTS VGSLLTSALM IGVAIVCLHG AFVVPDDLFM DDQEPANAGL LSFLGGSATS
201: GRV

Best Arabidopsis Sequence Match ( AT3G56110.4 )
(BLAST)

001: MATPPTLPVT NQQAVQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL IDRSSMARPE SLTDALSRIR KNLAYFKVNY VAIVSLVLAF SLFSHPLSLL
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV

Arabidopsis Description

PRA1B1PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VNJ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.