Factsheet for Bra009110.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 3
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70153	Canola	plastid	99.07	99.07
Bra003228.1-P	Field mustard	plastid	68.84	70.14
Bra007216.1-P	Field mustard	plastid	65.58	69.46
Solyc06g050570.1.1	Tomato	plastid	70.23	69.27
PGSC0003DMT400061546	Potato	plastid	70.23	69.27
AT5G05380.2	Thale cress	plasma membrane	91.16	69.01
Bra004965.1-P	Field mustard	plastid	67.44	68.08
KRH54835	Soybean	endoplasmic reticulum, extracellular, vacuole	32.09	63.89
KRH14895	Soybean	plastid	62.79	62.79
KRH73238	Soybean	plastid	62.33	62.33
Bra017037.1-P	Field mustard	plastid	23.72	59.3
Bra007796.1-P	Field mustard	plastid	23.26	58.14
Bra000056.1-P	Field mustard	plastid	58.14	56.31
Bra005924.1-P	Field mustard	plastid	52.09	51.38
Bra005112.1-P	Field mustard	plastid	37.67	48.21
Bra037983.1-P	Field mustard	extracellular, plasma membrane	26.05	40.0
Bra021504.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	31.63	37.36
Bra027406.1-P	Field mustard	plasma membrane	31.16	37.02
Bra031001.1-P	Field mustard	plasma membrane	28.37	33.7
Bra025954.1-P	Field mustard	plasma membrane	28.84	33.7
Bra011125.1-P	Field mustard	mitochondrion	26.98	33.14
Bra014355.1-P	Field mustard	cytosol, plasma membrane, plastid	27.91	31.75
Bra030561.1-P	Field mustard	plasma membrane	26.05	31.46
Bra018602.1-P	Field mustard	plastid	30.23	31.25
Bra002833.1-P	Field mustard	plastid	25.58	29.73
Bra038009.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	25.58	29.57
Bra021503.1-P	Field mustard	plastid	25.12	25.96
Bra021502.1-P	Field mustard	plastid	23.72	23.83

Protein Annotations

EnsemblPlants:Bra009110.1	EnsemblPlants:Bra009110.1-P	EnsemblPlantsGene:Bra009110	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002544A86	UniProt:M4CY13	MapMan:22.8.4.3.2	:	:	:

Description

AT5G05380 (E=2e-081) PRA1.B3 | PRA1.B3 (PRENYLATED RAB ACCEPTOR 1.B3)

Coordinates

chrA10:+:15279041..15279688

Molecular Weight (calculated)

23202.4 Da

IEP (calculated)

9.230

GRAVY (calculated)

0.533

Length

215 amino acids

Sequence
(BLAST)

001: MANPSTLPIS DHSGGSPPQQ PVSTPAFRTF LSRLSGSIRQ SLSQRRPWLE LVDRSAISRP DSLADAYSRI RRNIPYFKVN YVTIVSLVLA LSLLSHPLSL
101: LVLLCLFGAW IFLYLFRQSD QPLVVLGRTF SDREMLAVLV ISTIVVVFLT SVGSLLTTAL MIGFGIVCLH GAFRAPEDLF LDEQEPANIG LLSFLSGAAT
201: SAAVAAASAP ASARV

Best Arabidopsis Sequence Match ( AT5G05380.2 )
(BLAST)

001: MGLFFMNLLK STWTVEMLRC RERSMVRVIT RDHDVNTGNR LLQKKSIHSY GPLIHAPSSH PHAQSCVMMA NPPTLPISDH SGGGSQSQQP VSTPAFRTFL
101: SRLSSSIRQS LSQRRPWLEL VDRSAISRPE SLTDAYSRIR RNLPYFKVNY VTIVSLVLAL SLLSHPFSLL VLLCLFCAWI FLYLFRPSDQ PLVVLGRTFS
201: DRETLGVLVI LTIVVVFLTS VGSLLTSALM IGFGIVCLHG AFRVPEDLFL DDQEPANTGL LSFLSGAATS AAVAAASTPA SGRV

Arabidopsis Description

PRA1.B3prenylated RAB acceptor 1.B3 [Source:TAIR;Acc:AT5G05380]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.