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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 2
  • extracellular 4
  • golgi 3
  • plasma membrane 4
  • endoplasmic reticulum 3
  • vacuole 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:extracellular
Plant-mPloc:plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003923.1-P
Bra009010.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra022985.1-P
Bra035731.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G55190.1 Bra003923.1-P AT1G71480.1 21798944
AT1G55190.1 Bra022985.1-P AT2G34690.1 18845362
AT1G55190.1 Bra010452.1-P AT4G25680.1 21798944
AT1G55190.1 Bra013908.1-P AT4G25680.1 21798944
AT1G55190.1 Bra013910.1-P AT4G25680.1 21798944
AT1G55190.1 Bra009010.1-P AT5G10730.1 21798944
AT1G55190.1 Bra035731.1-P AT5G51180.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY24050 Canola cytosol, plasma membrane, plastid 98.57 73.8
CDY33064 Canola cytosol, plasma membrane, plastid 97.86 73.26
AT1G55190.1 Thale cress plasma membrane 81.43 60.32
Bra014355.1-P Field mustard cytosol, plasma membrane, plastid 79.29 58.73
Bra021504.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 56.43 43.41
PGSC0003DMT400006409 Potato plasma membrane 56.43 43.41
Bra027406.1-P Field mustard plasma membrane 55.0 42.54
Solyc03g121460.1.1 Tomato plastid 55.0 42.31
KRH47141 Soybean plasma membrane 51.43 40.45
VIT_09s0002g02400.t01 Wine grape plastid 55.71 40.41
KRH44167 Soybean plasma membrane 50.71 40.34
KRH10001 Soybean mitochondrion 50.71 38.59
KRH23330 Soybean plastid 50.0 38.04
GSMUA_Achr7P09070_001 Banana plastid 48.57 36.17
Bra031001.1-P Field mustard plasma membrane 45.71 35.36
Bra025954.1-P Field mustard plasma membrane 46.43 35.33
TraesCS1D01G130300.1 Wheat plastid 44.29 32.46
TraesCS1B01G143000.1 Wheat plastid 44.29 32.29
Zm00001d039455_P002 Maize extracellular, mitochondrion 44.29 32.12
TraesCS1A01G124100.1 Wheat plastid 43.57 31.94
EES00126 Sorghum plastid 43.57 31.77
Os05t0200280-01 Rice plasma membrane 42.86 31.09
Bra018602.1-P Field mustard plastid 45.0 30.29
Bra011125.1-P Field mustard mitochondrion 37.86 30.29
TraesCS3B01G122600.1 Wheat plastid 40.71 30.0
TraesCS3D01G106500.1 Wheat plastid 40.71 30.0
Os01t0196500-01 Rice plastid 42.14 29.35
TraesCS3A01G104300.1 Wheat plastid 40.0 29.32
Zm00001d037747_P001 Maize plastid 39.29 29.26
OQU77594 Sorghum plastid 40.71 29.08
HORVU1Hr1G028520.1 Barley plastid 44.29 28.7
Bra007216.1-P Field mustard plastid 40.71 28.08
Bra004965.1-P Field mustard plastid 42.14 27.7
Bra003228.1-P Field mustard plastid 41.43 27.49
Bra038009.1-P Field mustard cytosol, endoplasmic reticulum, plasma membrane 36.43 27.42
Bra005112.1-P Field mustard plastid 32.86 27.38
Bra009110.1-P Field mustard plastid 40.0 26.05
Bra030561.1-P Field mustard plasma membrane 32.86 25.84
Bra002833.1-P Field mustard plastid 32.14 24.32
Bra021502.1-P Field mustard plastid 37.14 24.3
Bra021503.1-P Field mustard plastid 35.71 24.04
HORVU3Hr1G018940.2 Barley plastid 42.14 23.14
Bra000056.1-P Field mustard plastid 35.71 22.52
Bra005924.1-P Field mustard plastid 32.86 21.1
Bra007796.1-P Field mustard plastid 10.71 17.44
Bra017037.1-P Field mustard plastid 10.71 17.44
Protein Annotations
EnsemblPlants:Bra037983.1EnsemblPlants:Bra037983.1-PEnsemblPlantsGene:Bra037983GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF2PFAM:PF03208SEG:segTMHMM:TMhelix
UniParc:UPI000253E6F9UniProt:M4FA69MapMan:22.8.4.3.2:::
Description
AT1G55190 (E=9e-042) PRA1.F2, PRA7 | PRA7
Coordinates
chrA06:-:295746..296168
Molecular Weight (calculated)
15497.2 Da
IEP (calculated)
6.336
GRAVY (calculated)
1.009
Length
140 amino acids
Sequence
(BLAST)
001: MNLPHGFFDA ISRIKTNLVY FRANYAVVVL LVLFLSLVYH PTSLLVLAVL VVFWIFLYFL RDEPLVVFGH QIDDRTVMIC LSVLTIVMLL FTHATANVLG
101: AVATAVVLVL VHAAVRRSDN LYLDEEAAAA SEASGLTSYP
Best Arabidopsis Sequence Match ( AT1G55190.1 )
(BLAST)
001: MTNYGAIPTS SHPSPAIDLE YISRAKHRIK SGLATRRPWK SMFDFESMTL PHGFFDAISR IKTNLGYFRA NYAIGVLFIL FLSLLYHPTS LIVLSILVVF
101: WIFLYFLRDE PLVVFGYQID DRTVLIGLSV LTVVMLLLTH ATSNILGSLL TAAVLVLIHA AVRRSDNLFL DEEAAAVTEA SGLMSYPSS
Arabidopsis Description
PRA1F2PRA1 family protein F2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C889]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.