Factsheet for Bra005924.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
extracellular 2
plasma membrane 2
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002620.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra019475.1-P
Bra027937.1-P
Bra033830.1-P
Bra038169.1-P
Bra038265.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G07110.1	Bra027937.1-P	AT1G56330.1	21798944
AT5G07110.1	Bra038169.1-P	AT1G56330.1	21798944
AT5G07110.1	Bra019475.1-P	AT3G46060.1	21798944
AT5G07110.1	Bra033830.1-P	AT3G46060.1	21798944
AT5G07110.1	Bra038265.1-P	AT3G46060.1	21798944
AT5G07110.1	Bra010452.1-P	AT4G25660.1	21798944
AT5G07110.1	Bra013908.1-P	AT4G25660.1	21798944
AT5G07110.1	Bra013910.1-P	AT4G25660.1	21798944
AT5G07110.1	Bra010452.1-P	AT4G25680.1	21798944
AT5G07110.1	Bra013908.1-P	AT4G25680.1	21798944
AT5G07110.1	Bra013910.1-P	AT4G25680.1	21798944
AT5G07110.1	Bra002620.1-P	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58876	Canola	plastid	99.08	99.08
AT5G07110.1	Thale cress	plastid	86.7	87.5
Bra007216.1-P	Field mustard	plastid	50.0	53.69
Bra003228.1-P	Field mustard	plastid	51.38	53.08
Bra004965.1-P	Field mustard	plastid	51.38	52.58
Bra009110.1-P	Field mustard	plastid	51.38	52.09
Bra000056.1-P	Field mustard	plastid	47.71	46.85
Bra017037.1-P	Field mustard	plastid	17.43	44.19
Bra005112.1-P	Field mustard	plastid	33.95	44.05
Bra007796.1-P	Field mustard	plastid	16.97	43.02
Bra037983.1-P	Field mustard	extracellular, plasma membrane	21.1	32.86
Bra021504.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	26.61	31.87
Bra038009.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	26.15	30.65
Bra002833.1-P	Field mustard	plastid	25.69	30.27
Bra027406.1-P	Field mustard	plasma membrane	24.77	29.83
Bra030561.1-P	Field mustard	plasma membrane	23.85	29.21
Bra014355.1-P	Field mustard	cytosol, plasma membrane, plastid	25.23	29.1
Bra011125.1-P	Field mustard	mitochondrion	22.48	28.0
Bra018602.1-P	Field mustard	plastid	26.61	27.88
Bra025954.1-P	Field mustard	plasma membrane	23.39	27.72
Bra031001.1-P	Field mustard	plasma membrane	22.02	26.52
Bra021503.1-P	Field mustard	plastid	21.56	22.6
Bra021502.1-P	Field mustard	plastid	21.56	21.96

Protein Annotations

EnsemblPlants:Bra005924.1	EnsemblPlants:Bra005924.1-P	EnsemblPlantsGene:Bra005924	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208
SEG:seg	TMHMM:TMhelix	UniParc:UPI000253F660	UniProt:M4CNY6	MapMan:22.8.4.3.2	:

Description

AT5G07110 (E=1e-068) PRA1.B6 | PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6)

Coordinates

chrA03:+:1238502..1239158

Molecular Weight (calculated)

23403.4 Da

IEP (calculated)

8.247

GRAVY (calculated)

0.432

Length

218 amino acids

Sequence
(BLAST)

001: MASPLLPTST PPDHLPTGGG DPQLLSSPRV LFSRVVSSVR HATSDARPWA ELIDRSAFSR PPSLSEAASR VRKNFSYFKS NYITLVAILL AASLLSHPFA
101: LFLLASLAAS WLFLYVFRPS DQPLVIGGRT FSDLETLGML CLCTVVVMFM TSVGSLLMST LALGMMAVAV HGAFRAPEDL FLEEQETIGS GLFNFFNQNA
201: TNAAAAAIAT SAMSRVRA

Best Arabidopsis Sequence Match ( AT5G07110.1 )
(BLAST)

001: MASPLLPTST TPDQLPGGDP QLLSSLRVLL SRVLATVRHA SADARPWAEL VDRSAFSRPP SLSEATSRVR KNFSYFRANY ITLVAILLAA SLLTHPFALF
101: LLASLAASWL FLYFFRPADQ PLVIGGRTFS DLETLGILCL STVVVMFMTS VGSLLMSTLA VGIMGVAIHG AFRAPEDLFL EEQEAIGSGL FAFFNNNASN
201: AAAAAIATSA MSRVRV

Arabidopsis Description

PRA1B6PRA1 family protein B6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.