Factsheet for Bra038265.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra010452.1-P
Bra010844.1-P	peroxisome
Bra013908.1-P
Bra013910.1-P
Bra020182.1-P
Bra021502.1-P
Bra021503.1-P
Bra029586.1-P
Bra032295.1-P	peroxisome

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	Bra010844.1-P	AT1G29260.1	23297417
AT3G46060.1	Bra032295.1-P	AT1G29260.1	23297417
AT3G46060.1	Bra029586.1-P	AT3G06540.1	21798944
AT3G46060.1	Bra021502.1-P	AT3G13720.1	21798944
AT3G46060.1	Bra021503.1-P	AT3G13720.1	21798944
AT3G46060.1	Bra010452.1-P	AT4G25660.1	21798944
AT3G46060.1	Bra013908.1-P	AT4G25660.1	21798944
AT3G46060.1	Bra013910.1-P	AT4G25660.1	21798944
AT3G46060.1	Bra002403.1-P	AT5G22290.1	21798944
AT3G46060.1	Bra006619.1-P	AT5G22290.1	21798944
AT3G46060.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86045	Canola	cytosol	57.45	100.0
AT3G46060.1	Thale cress	cytosol	56.65	98.61
Bra019475.1-P	Field mustard	cytosol	56.12	97.69
Bra033830.1-P	Field mustard	cytosol	49.47	96.37
Bra006690.1-P	Field mustard	cytosol	55.32	96.3
Bra002527.1-P	Field mustard	cytosol	54.79	95.37
Solyc06g005350.2.1	Tomato	cytosol	36.44	95.14
VIT_06s0004g04200.t01	Wine grape	cytosol	54.26	94.44
KRH29838	Soybean	endoplasmic reticulum	53.72	94.39
KRH24835	Soybean	cytosol	53.46	93.93
PGSC0003DMT400040138	Potato	cytosol	53.46	93.06
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	53.19	92.59
Bra020282.1-P	Field mustard	cytosol	53.19	92.59
KRH10292	Soybean	cytosol	52.66	92.09
KRH23030	Soybean	endoplasmic reticulum	52.39	91.63
Os03t0819900-01	Rice	plasma membrane	52.13	91.59
Os05t0461300-01	Rice	plastid	52.39	91.2
PGSC0003DMT400008917	Potato	cytosol	52.39	91.2
EES19652	Sorghum	cytosol	52.13	91.16
Zm00001d038380_P001	Maize	extracellular, plasma membrane	52.13	91.16
Zm00001d010538_P005	Maize	cytosol	52.13	91.16
Zm00001d034638_P001	Maize	cytosol	52.13	91.16
EER93195	Sorghum	cytosol	51.86	91.12
GSMUA_Achr9P03220_001	Banana	cytosol	52.13	90.74
GSMUA_Achr6P34270_001	Banana	cytosol	52.13	90.74
GSMUA_Achr11P...	Banana	cytosol	52.13	90.74
GSMUA_Achr10P...	Banana	cytosol	52.13	90.74
Os07t0239400-01	Rice	plasma membrane	51.86	90.7
TraesCS1D01G285200.1	Wheat	cytosol	51.06	89.72
TraesCS1B01G295600.1	Wheat	cytosol	51.06	89.72
TraesCS1A01G286200.1	Wheat	cytosol	51.06	89.72
TraesCS3B01G388900.1	Wheat	cytosol	51.06	88.89
TraesCS3A01G356000.3	Wheat	plastid	51.06	88.89
GSMUA_AchrUn_...	Banana	cytosol	51.06	88.89
TraesCS5B01G489300.1	Wheat	golgi	50.53	88.78
TraesCS5A01G476400.1	Wheat	cytosol	50.27	88.32
GSMUA_Achr8P02620_001	Banana	cytosol	50.53	87.96
TraesCS5D01G489700.1	Wheat	cytosol	50.0	87.85
GSMUA_Achr10P...	Banana	cytosol	50.27	87.5
OQU88745	Sorghum	cytosol	51.33	85.4
CDX99131	Canola	cytosol	69.68	85.06
Bra005767.1-P	Field mustard	cytosol	48.4	83.87
HORVU1Hr1G072070.1	Barley	cytosol	49.2	82.22
TraesCS3D01G350000.3	Wheat	cytosol	51.06	80.67
Bra029803.1-P	Field mustard	cytosol	47.07	78.32
Bra003149.1-P	Field mustard	cytosol	55.85	78.07
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	47.61	69.11
HORVU3Hr1G086830.7	Barley	cytosol	44.41	63.02
Bra024956.1-P	Field mustard	cytosol	32.98	61.39
Bra012658.1-P	Field mustard	cytosol	32.98	61.39
Bra017497.1-P	Field mustard	cytosol	32.71	60.89
Bra022113.1-P	Field mustard	cytosol	32.71	60.89
Bra038676.1-P	Field mustard	vacuole	31.65	57.77
Bra001418.1-P	Field mustard	cytosol, extracellular	31.38	57.28
Bra040162.1-P	Field mustard	cytosol	32.98	45.26
Bra011645.1-P	Field mustard	cytosol	23.67	42.18
Bra021065.1-P	Field mustard	cytosol	23.4	41.9
Bra017733.1-P	Field mustard	cytosol	23.4	41.71
Bra026231.1-P	Field mustard	cytosol	23.4	41.71

Protein Annotations

MapMan:17.1.3.1.17	MapMan:22.8.1.5	Gene3D:3.30.1370.30	Gene3D:3.30.1490.10	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra038265
EnsemblPlants:Bra038265.1	EnsemblPlants:Bra038265.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003735	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030529	UniProt:M4FAZ9
InterPro:P-loop_NTPase	PFAM:PF00071	PFAM:PF00410	PRINTS:PR00449	ScanProsite:PS00053	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF829	InterPro:Ribosomal_S8	InterPro:Ribosomal_S8_sf	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	SUPFAM:SSF56047	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000253F55F	SEG:seg	:	:

Description

AT3G46060 (E=2e-090) ARA3 | ATRAB8A; GTP binding

Coordinates

chrA06:-:11264798..11268804

Molecular Weight (calculated)

41953.5 Da

IEP (calculated)

9.528

GRAVY (calculated)

-0.225

Length

376 amino acids

Sequence
(BLAST)

001: MVRISVLNDA LKSMYNAEKR GKRQVMIRLS SKVIIKFLII VMQKHSYIGE FEYVDDHRSR KIVVELNGRL NKCGVISPRF DVGVKEIEGW TARLLPSCQF
101: GYIVLTTSAG IMDHEEARRK NRRSGGKEES KSGVGRILAV LQILCSDYIG FVSVSFDPNP MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF
201: TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP
301: TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIRISQTDQ AAGAAQATQK SACCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.