Factsheet for VIT_06s0004g04200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0044g00070.t01
VIT_06s0080g00970.t01
VIT_09s0002g02400.t01
VIT_10s0003g01320.t01	peroxisome
VIT_16s0050g01050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	VIT_10s0003g01320.t01	AT1G29260.1	23297417
AT3G46060.1	VIT_04s0044g00070.t01	AT3G06540.1	21798944
AT3G46060.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944
AT3G46060.1	VIT_16s0050g01050.t01	AT4G25660.1	21798944
AT3G46060.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72056	Canola	cytosol	56.02	96.8
Solyc06g005350.2.1	Tomato	cytosol	63.89	95.83
KRH29838	Soybean	endoplasmic reticulum	94.91	95.79
KRH24835	Soybean	cytosol	94.44	95.33
AT5G59840.1	Thale cress	cytosol	94.91	94.91
CDX68365	Canola	cytosol	94.44	94.44
CDX86045	Canola	cytosol	94.44	94.44
VIT_13s0019g00520.t01	Wine grape	extracellular	94.44	94.44
CDY71506	Canola	cytosol	94.44	94.44
VIT_08s0040g02490.t01	Wine grape	cytosol	93.98	93.98
PGSC0003DMT400040138	Potato	cytosol	93.98	93.98
Bra006690.1-P	Field mustard	cytosol	93.98	93.98
AT3G46060.1	Thale cress	cytosol	93.98	93.98
CDY30926	Canola	cytosol	93.98	93.98
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	93.52	93.52
Bra019475.1-P	Field mustard	cytosol	93.52	93.52
CDX88725	Canola	cytosol	93.52	93.52
CDX88726	Canola	cytosol	93.52	93.52
CDY31592	Canola	cytosol	93.52	93.52
KRH10292	Soybean	cytosol	93.06	93.49
CDX77855	Canola	cytosol	93.06	93.06
Bra002527.1-P	Field mustard	cytosol	93.06	93.06
Zm00001d038380_P001	Maize	extracellular, plasma membrane	92.59	93.02
EES19652	Sorghum	cytosol	92.59	93.02
KRH23030	Soybean	endoplasmic reticulum	92.59	93.02
Zm00001d010538_P005	Maize	cytosol	92.59	93.02
Bra033830.1-P	Field mustard	cytosol	82.41	92.23
PGSC0003DMT400008917	Potato	cytosol	92.13	92.13
GSMUA_Achr11P...	Banana	cytosol	92.13	92.13
Os07t0239400-01	Rice	plasma membrane	91.67	92.09
Bra020282.1-P	Field mustard	cytosol	91.67	91.67
GSMUA_Achr9P03220_001	Banana	cytosol	91.67	91.67
GSMUA_Achr10P...	Banana	cytosol	91.67	91.67
GSMUA_Achr6P34270_001	Banana	cytosol	91.67	91.67
CDX80224	Canola	cytosol	89.81	91.08
GSMUA_AchrUn_...	Banana	cytosol	90.74	90.74
CDY09249	Canola	cytosol	90.74	90.74
Os05t0461300-01	Rice	plastid	90.74	90.74
Os03t0819900-01	Rice	plasma membrane	89.81	90.65
EER93195	Sorghum	cytosol	89.35	90.19
GSMUA_Achr10P...	Banana	cytosol	89.81	89.81
Zm00001d034638_P001	Maize	cytosol	89.35	89.77
TraesCS1A01G286200.1	Wheat	cytosol	88.89	89.72
TraesCS1B01G295600.1	Wheat	cytosol	88.89	89.72
TraesCS1D01G285200.1	Wheat	cytosol	88.89	89.72
VIT_08s0007g04750.t01	Wine grape	cytosol	89.35	89.35
TraesCS3A01G356000.3	Wheat	plastid	88.89	88.89
TraesCS3B01G388900.1	Wheat	cytosol	88.89	88.89
GSMUA_Achr8P02620_001	Banana	cytosol	88.89	88.89
TraesCS5B01G489300.1	Wheat	golgi	87.04	87.85
TraesCS5A01G476400.1	Wheat	cytosol	86.57	87.38
TraesCS5D01G489700.1	Wheat	cytosol	86.11	86.92
OQU88745	Sorghum	cytosol	90.28	86.28
HORVU1Hr1G072070.1	Barley	cytosol	86.57	83.11
CDY34032	Canola	cytosol	55.09	80.95
TraesCS3D01G350000.3	Wheat	cytosol	88.89	80.67
CDY70243	Canola	cytosol	54.63	77.63
CDX94925	Canola	cytosol	55.56	73.17
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	80.56	67.18
CDX99131	Canola	cytosol	93.98	65.91
HORVU3Hr1G086830.7	Barley	cytosol	76.39	62.26
VIT_00s1372g00020.t01	Wine grape	cytosol	56.94	62.12
VIT_16s0013g00520.t01	Wine grape	extracellular	57.87	61.58
VIT_12s0035g01150.t01	Wine grape	vacuole	54.63	58.42
VIT_00s0878g00030.t01	Wine grape	cytosol	26.39	55.88
Bra038265.1-P	Field mustard	cytosol	94.44	54.26
VIT_15s0021g01410.t01	Wine grape	cytosol	43.98	46.34
VIT_12s0057g01470.t01	Wine grape	extracellular	41.67	42.65
VIT_14s0066g00180.t01	Wine grape	cytosol	41.2	42.58
VIT_00s1506g00010.t01	Wine grape	cytosol	25.0	36.24
VIT_00s0455g00010.t01	Wine grape	cytosol	14.81	24.06

Protein Annotations

EntrezGene:100243217	wikigene:100243217	MapMan:22.8.1.5	Gene3D:3.40.50.300	EMBL:AM479401	ProteinID:CAN64127
ProteinID:CAN64127.1	ProteinID:CBI16184	ProteinID:CBI16184.3	UniProt:D7SKK6	EMBL:FN594951	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006810
GO:GO:0006904	GO:GO:0008150	GO:GO:0009306	GO:GO:0009987	GO:GO:0016787	GO:GO:0017157
EntrezGene:LOC100243217	wikigene:LOC100243217	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC61377	TIGR:TC68808
TIGRFAMs:TIGR00231	UniParc:UPI00015C77D6	ArrayExpress:VIT_06s0004g04200	EnsemblPlantsGene:VIT_06s0004g04200	EnsemblPlants:VIT_06s0004g04200.t01	unigene:Vvi.1523
RefSeq:XP_002284365	RefSeq:XP_002284365.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:5163664..5173222

Molecular Weight (calculated)

23931.4 Da

IEP (calculated)

8.023

GRAVY (calculated)

-0.306

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEEVF FSIARDIKQR LADTDSRAEP TAIRINQPDQ
201: ASGVGQTAQK SACCGS

Best Arabidopsis Sequence Match ( AT5G59840.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP KSKGQALADE YGIKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGS

Arabidopsis Description

Putative GTP-binding protein ara-3 [Source:UniProtKB/TrEMBL;Acc:Q9FJF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.