Factsheet for VIT_00s0455g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
endoplasmic reticulum 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17170.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1506g00010.t01	Wine grape	cytosol	52.63	46.98
KRH11646	Soybean	endoplasmic reticulum	52.63	33.18
KRH36659	Soybean	cytosol	52.63	33.18
AT4G17170.1	Thale cress	cytosol	52.63	33.18
Bra026231.1-P	Field mustard	cytosol	51.88	32.7
CDY35596	Canola	cytosol	51.88	32.7
CDY42961	Canola	cytosol	51.88	32.7
CDY09641	Canola	cytosol	51.13	32.23
VIT_12s0057g01470.t01	Wine grape	extracellular	49.62	31.28
VIT_14s0066g00180.t01	Wine grape	cytosol	46.62	29.67
TraesCS3A01G489900.1	Wheat	cytosol	38.35	28.49
TraesCS3D01G495900.1	Wheat	cytosol	38.35	28.49
TraesCS3B01G547700.1	Wheat	plastid	31.58	20.19
VIT_16s0013g00520.t01	Wine grape	extracellular	29.32	19.21
VIT_00s1372g00020.t01	Wine grape	cytosol	27.82	18.69
VIT_12s0035g01150.t01	Wine grape	vacuole	25.56	16.83
VIT_06s0004g04200.t01	Wine grape	cytosol	24.06	14.81
VIT_08s0007g04750.t01	Wine grape	cytosol	21.8	13.43
VIT_15s0021g01410.t01	Wine grape	cytosol	20.3	13.17
VIT_08s0040g02490.t01	Wine grape	cytosol	21.05	12.96
VIT_13s0019g00520.t01	Wine grape	extracellular	21.05	12.96
VIT_00s0878g00030.t01	Wine grape	cytosol	1.5	1.96

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB45296	ProteinID:CCB45296.1	UniProt:F6GZB0	EMBL:FN595005
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787
InterPro:P-loop_NTPase	PFAM:PF00071	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843	SMART:SM00175
SUPFAM:SSF52540	InterPro:Small_GTPase	UniParc:UPI000210899A	ArrayExpress:VIT_00s0455g00010	EnsemblPlantsGene:VIT_00s0455g00010	EnsemblPlants:VIT_00s0455g00010.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:29516759..29517907

Molecular Weight (calculated)

15358.7 Da

IEP (calculated)

8.662

GRAVY (calculated)

0.047

Length

133 amino acids

Sequence
(BLAST)

001: MSIMLIGNKC DLAHRRAVST EEGEQFAKEN GLIFMEASAK TAQNVEEAFV KTAATIYKKI QDGVFDVSNE MRDVADVVLL VFFAVSRDKG WIWWNPRAIR
101: RQRWLFFSSW RLLQLKFETP LVKCILSTCS CLF

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.