Factsheet for TraesCS3D01G495900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17170.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT4G17170.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT4G17170.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G489900.1	Wheat	cytosol	97.21	97.21
TraesCS3B01G547700.1	Wheat	plastid	82.12	70.67
TraesCS6D01G188500.1	Wheat	golgi	69.27	59.05
TraesCS2D01G331300.1	Wheat	golgi, plastid	68.72	58.57
AT4G17170.1	Thale cress	cytosol	68.72	58.29
KRH11646	Soybean	endoplasmic reticulum	68.72	58.29
KRH36659	Soybean	cytosol	68.72	58.29
Bra026231.1-P	Field mustard	cytosol	68.16	57.82
CDY42961	Canola	cytosol	68.16	57.82
CDY35596	Canola	cytosol	68.16	57.82
CDY09641	Canola	cytosol	67.6	57.35
TraesCS5D01G264100.1	Wheat	cytosol	56.42	47.64
VIT_00s0455g00010.t01	Wine grape	cytosol	28.49	38.35
TraesCS3D01G056500.1	Wheat	golgi	39.66	34.98
TraesCS3D01G056600.1	Wheat	plastid	37.99	33.5
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	37.99	33.33
TraesCS3D01G206600.1	Wheat	cytosol	39.11	31.67
TraesCS2D01G309200.2	Wheat	cytosol	37.43	31.46
TraesCS1D01G285200.1	Wheat	cytosol	36.31	30.37
TraesCS5D01G489700.1	Wheat	cytosol	35.75	29.91
TraesCS3D01G350000.3	Wheat	cytosol	36.31	27.31

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843	SMART:SM00173	SMART:SM00174
SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS3D01G495900
EnsemblPlants:TraesCS3D01G495900.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:587904090..587906082

Molecular Weight (calculated)

20234.2 Da

IEP (calculated)

5.921

GRAVY (calculated)

-0.164

Length

179 amino acids

Sequence
(BLAST)

001: MSLYNFTYIL IGDSGVGKTC LLVQFLHKEF HPVVDFNIDT ECGDKMITID NKPAKLLIWD TPGRHAFRSL TTPLYDEAVG ALLVYDITRR ETFNYLANWL
101: QDARKYAHPG MTIMLIGNKC DLSHSRAVSY EEGEQFAKDH GLLFMEASAK TAQNVVEGFL QTAVGIYKKI QDPSSDLYN

Best Arabidopsis Sequence Match ( AT3G12160.1 )
(BLAST)

001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS

Arabidopsis Description

RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.