Factsheet for TraesCS2D01G331300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	cytosol, endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G350600.1	Wheat	cytosol	100.0	100.0
TraesCS2A01G331600.1	Wheat	cytosol	100.0	100.0
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	96.67	96.67
Zm00001d025660_P001	Maize	plasma membrane, plastid	96.19	96.19
TraesCS6D01G188500.1	Wheat	golgi	91.9	91.9
Os04t0470100-01	Rice	plasma membrane	91.9	91.47
Solyc10g007700.2.1	Tomato	plastid	91.43	91.0
PGSC0003DMT400020113	Potato	cytosol	90.95	90.52
PGSC0003DMT400079822	Potato	cytosol	90.95	90.52
Solyc12g011130.1.1	Tomato	cytosol	90.95	90.52
Bra021065.1-P	Field mustard	cytosol	89.52	89.52
CDY58166	Canola	cytosol	89.52	89.52
CDY50126	Canola	cytosol	89.52	89.52
AT4G17160.1	Thale cress	cytosol	79.05	80.98
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	50.48	76.26
TraesCS3D01G495900.1	Wheat	cytosol	58.57	68.72
TraesCS5D01G264100.1	Wheat	cytosol	64.76	64.15
TraesCS3D01G056500.1	Wheat	golgi	46.19	47.78
TraesCS3D01G056600.1	Wheat	plastid	44.29	45.81
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	42.86	44.12
TraesCS2D01G309200.2	Wheat	cytosol	42.86	42.25
TraesCS3D01G206600.1	Wheat	cytosol	44.29	42.08
TraesCS5D01G489700.1	Wheat	cytosol	42.86	42.06
TraesCS1D01G285200.1	Wheat	cytosol	42.38	41.59
TraesCS3D01G350000.3	Wheat	cytosol	42.86	37.82

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS2D01G331300
EnsemblPlants:TraesCS2D01G331300.1	TIGR:cd01866	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:+:423872448..423874567

Molecular Weight (calculated)

22963.3 Da

IEP (calculated)

7.446

GRAVY (calculated)

-0.173

Length

210 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLVGNK CDLSHRRAVS FEEGEQFAKE NGLIFMEASA KTAQNVEEGF VKTAGAIYKK IQDGVFDVSN ESYGIKVGYA VPGQAGGAGA
201: SSSQGGSCCG

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.