Factsheet for Solyc12g011130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020113	Potato	cytosol	100.0	100.0
Solyc10g007700.2.1	Tomato	plastid	98.58	98.58
Bra021065.1-P	Field mustard	cytosol	93.36	93.81
CDY50126	Canola	cytosol	93.36	93.81
CDY58166	Canola	cytosol	93.36	93.81
Solyc07g056150.2.1	Tomato	cytosol, nucleus	92.89	92.45
Zm00001d025660_P001	Maize	plasma membrane, plastid	91.94	92.38
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	91.47	91.9
HORVU6Hr1G051470.1	Barley	cytosol	91.47	91.9
Os02t0586400-01	Rice	plasma membrane	91.47	91.9
TraesCS6D01G188500.1	Wheat	golgi	91.47	91.9
TraesCS6B01G230400.2	Wheat	cytosol	91.47	91.9
TraesCS6A01G207100.1	Wheat	cytosol	91.47	91.9
EES05332	Sorghum	cytosol	90.52	90.95
TraesCS2A01G331600.1	Wheat	cytosol	90.52	90.95
TraesCS2B01G350600.1	Wheat	cytosol	90.52	90.95
TraesCS2D01G331300.1	Wheat	golgi, plastid	90.52	90.95
Os04t0470100-01	Rice	plasma membrane	87.2	87.2
Solyc02g093530.2.1	Tomato	plastid	86.26	86.26
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	90.05	84.07
AT4G17160.1	Thale cress	cytosol	78.67	80.98
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	52.13	79.14
Zm00001d050915_P004	Maize	cytosol	85.78	72.98
Solyc06g060210.1.1	Tomato	cytosol	55.45	57.64
Solyc05g052070.2.1	Tomato	unclear	46.92	48.77
Solyc08g078070.2.1	Tomato	nucleus	46.45	48.28
Solyc01g090170.2.1	Tomato	unclear	45.97	47.78
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	45.5	47.29
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	44.08	46.04
Solyc06g005350.2.1	Tomato	cytosol	31.28	45.83
Solyc09g010370.2.1	Tomato	extracellular, plastid	43.13	42.13
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	42.65	41.67
Solyc04g011360.2.1	Tomato	plastid	42.65	41.67
Solyc10g086350.1.1	Tomato	cytosol, nucleus	42.18	41.2

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	GO:GO:0030100	UniProt:K4DCJ9	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF597	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
EnsemblPlantsGene:Solyc12g011130.1	EnsemblPlants:Solyc12g011130.1.1	TIGRFAMs:TIGR00231	UniParc:UPI000276A18A	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:3971227..3974056

Molecular Weight (calculated)

23142.5 Da

IEP (calculated)

7.446

GRAVY (calculated)

-0.212

Length

211 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMSIMLIGNK CDLAHRRAVS TEEGEQFAKE NGLIFMEASA KTAQNVEEAF IKTASTIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GAASQGGACC S

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.