Factsheet for Solyc06g005350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
endoplasmic reticulum 3
golgi 3
mitochondrion 1
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082060.1.1
Solyc02g082730.2.1
Solyc03g062940.2.1	peroxisome
Solyc03g121460.1.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	Solyc03g062940.2.1	AT1G29260.1	23297417
AT3G46060.1	Solyc02g082730.2.1	AT3G06540.1	21798944
AT3G46060.1	Solyc03g121460.1.1	AT3G13720.1	21798944
AT3G46060.1	Solyc02g082060.1.1	AT4G25660.1	21798944
AT3G46060.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT3G46060.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72056	Canola	cytosol	80.56	92.8
PGSC0003DMT400008917	Potato	cytosol	97.22	64.81
Os07t0239400-01	Rice	plasma membrane	95.83	64.19
Os03t0819900-01	Rice	plasma membrane	95.14	64.02
KRH29838	Soybean	endoplasmic reticulum	95.14	64.02
KRH24835	Soybean	cytosol	95.14	64.02
VIT_06s0004g04200.t01	Wine grape	cytosol	95.83	63.89
Solyc04g011360.2.1	Tomato	plastid	95.83	63.89
Zm00001d038380_P001	Maize	extracellular, plasma membrane	95.14	63.72
Zm00001d034638_P001	Maize	cytosol	95.14	63.72
Zm00001d010538_P005	Maize	cytosol	95.14	63.72
EES19652	Sorghum	cytosol	95.14	63.72
EER93195	Sorghum	cytosol	94.44	63.55
CDY71506	Canola	cytosol	95.14	63.43
AT5G59840.1	Thale cress	cytosol	95.14	63.43
GSMUA_Achr10P...	Banana	cytosol	95.14	63.43
GSMUA_Achr11P...	Banana	cytosol	95.14	63.43
Os05t0461300-01	Rice	plastid	95.14	63.43
Solyc09g010370.2.1	Tomato	extracellular, plastid	95.14	63.43
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	95.14	63.43
AT3G46060.1	Thale cress	cytosol	95.14	63.43
CDX68365	Canola	cytosol	95.14	63.43
CDX86045	Canola	cytosol	95.14	63.43
Bra019475.1-P	Field mustard	cytosol	95.14	63.43
CDY30926	Canola	cytosol	95.14	63.43
KRH10292	Soybean	cytosol	94.44	63.26
TraesCS1A01G286200.1	Wheat	cytosol	93.75	63.08
TraesCS1B01G295600.1	Wheat	cytosol	93.75	63.08
TraesCS1D01G285200.1	Wheat	cytosol	93.75	63.08
Bra002527.1-P	Field mustard	cytosol	94.44	62.96
CDY31592	Canola	cytosol	94.44	62.96
GSMUA_AchrUn_...	Banana	cytosol	94.44	62.96
GSMUA_Achr9P03220_001	Banana	cytosol	94.44	62.96
Bra006690.1-P	Field mustard	cytosol	94.44	62.96
KRH23030	Soybean	endoplasmic reticulum	93.75	62.79
TraesCS5D01G489700.1	Wheat	cytosol	93.06	62.62
TraesCS5A01G476400.1	Wheat	cytosol	93.06	62.62
TraesCS5B01G489300.1	Wheat	golgi	93.06	62.62
TraesCS3A01G356000.3	Wheat	plastid	93.75	62.5
TraesCS3B01G388900.1	Wheat	cytosol	93.75	62.5
Bra020282.1-P	Field mustard	cytosol	93.75	62.5
Solyc10g086350.1.1	Tomato	cytosol, nucleus	93.75	62.5
CDX77855	Canola	cytosol	93.75	62.5
CDX88725	Canola	cytosol	93.75	62.5
CDX88726	Canola	cytosol	93.75	62.5
GSMUA_Achr8P02620_001	Banana	cytosol	93.75	62.5
GSMUA_Achr6P34270_001	Banana	cytosol	93.75	62.5
GSMUA_Achr10P...	Banana	cytosol	93.75	62.5
CDY09249	Canola	cytosol	93.75	62.5
CDX80224	Canola	cytosol	90.97	61.5
OQU88745	Sorghum	cytosol	95.14	60.62
HORVU1Hr1G072070.1	Barley	cytosol	93.75	60.0
Bra033830.1-P	Field mustard	cytosol	78.47	58.55
TraesCS3D01G350000.3	Wheat	cytosol	93.75	56.72
CDY34032	Canola	cytosol	48.61	47.62
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	83.33	46.33
CDY70243	Canola	cytosol	47.92	45.39
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	63.19	44.83
CDX99131	Canola	cytosol	95.14	44.48
Solyc08g078070.2.1	Tomato	nucleus	62.5	44.34
Solyc05g052070.2.1	Tomato	unclear	62.5	44.34
Solyc01g090170.2.1	Tomato	unclear	62.5	44.34
CDX94925	Canola	cytosol	49.31	43.29
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	59.72	42.57
HORVU3Hr1G086830.7	Barley	cytosol	76.39	41.51
Bra038265.1-P	Field mustard	cytosol	95.14	36.44
Solyc02g093530.2.1	Tomato	plastid	47.22	32.23
Solyc10g007700.2.1	Tomato	plastid	45.83	31.28
Solyc12g011130.1.1	Tomato	cytosol	45.83	31.28
Solyc07g056150.2.1	Tomato	cytosol, nucleus	43.06	29.25
Solyc06g060210.1.1	Tomato	cytosol	40.97	29.06

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009306
GO:GO:0009987	GO:GO:0016787	GO:GO:0017157	UniProt:K4C319	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF829	SMART:SM00173	SMART:SM00174
SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc06g005350.2	EnsemblPlants:Solyc06g005350.2.1
TIGRFAMs:TIGR00231	UniParc:UPI0002765B2F	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:362156..370204

Molecular Weight (calculated)

16138.5 Da

IEP (calculated)

9.902

GRAVY (calculated)

-0.187

Length

144 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTNFITTIGI DFKIRTIELK GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNITNWI RNIELHASNN VNKILVGNKT DMDESKRAVP TSKG

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.