Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400022498 | Potato | cytosol | 99.37 | 99.37 |
| KRH21268 | Soybean | cytosol | 83.86 | 83.33 |
| KRH11018 | Soybean | cytosol | 80.38 | 82.47 |
| CDX99799 | Canola | cytosol | 80.38 | 80.13 |
| AT1G29260.1 | Thale cress | cytosol | 79.75 | 79.5 |
| Bra032295.1-P | Field mustard | cytosol | 79.43 | 79.18 |
| CDY50786 | Canola | cytosol | 79.43 | 79.18 |
| Bra010844.1-P | Field mustard | cytosol | 79.11 | 78.86 |
| CDY43325 | Canola | cytosol | 78.8 | 78.55 |
| CDX90175 | Canola | cytosol | 78.8 | 78.55 |
| GSMUA_Achr6P14510_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 73.42 | 72.96 |
| VIT_10s0003g01320.t01 | Wine grape | cytosol | 81.96 | 66.41 |
| EES04830 | Sorghum | cytosol, peroxisome, plastid | 63.92 | 62.93 |
| Zm00001d016170_P001 | Maize | cytosol | 62.97 | 62.38 |
| TraesCS3D01G373900.1 | Wheat | cytosol | 62.03 | 61.83 |
| Os02t0245100-01 | Rice | cytosol, golgi, plastid | 62.34 | 61.18 |
| GSMUA_Achr10P... | Banana | mitochondrion | 48.42 | 47.81 |
| HORVU3Hr1G082800.3 | Barley | cytosol, mitochondrion | 38.29 | 37.58 |
| Solyc01g111590.2.1 | Tomato | cytosol | 22.47 | 17.62 |
| Solyc01g104510.2.1 | Tomato | nucleus | 22.15 | 16.51 |
| Solyc07g039330.2.1 | Tomato | nucleus | 18.99 | 15.92 |
| Solyc03g121580.2.1 | Tomato | nucleus | 21.2 | 14.57 |
| Solyc05g014090.1.1 | Tomato | mitochondrion | 17.72 | 14.11 |
| Solyc05g025630.1.1 | Tomato | cytosol, mitochondrion, nucleus | 19.62 | 13.39 |
| Solyc07g039200.2.1 | Tomato | nucleus | 19.3 | 13.2 |
| Solyc05g018780.1.1 | Tomato | cytosol, mitochondrion, nucleus | 15.82 | 13.19 |
| Solyc05g014070.1.1 | Tomato | cytosol, mitochondrion, nucleus | 3.16 | 8.47 |
| Solyc07g039320.2.1 | Tomato | nucleus | 2.22 | 4.61 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:23.4.1.1.2 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006625 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4BH43 |
| PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 |
| PANTHER:PTHR22850:SF183 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc03g062940.2 | EnsemblPlants:Solyc03g062940.2.1 | UniParc:UPI00027692AD |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : |
Description
Peroxisome biogenesis protein 7 [Source:Projected from Arabidopsis thaliana (AT1G29260) UniProtKB/Swiss-Prot;Acc:Q9XF57]
Coordinates
chr3:+:32519733..32521255
Molecular Weight (calculated)
35443.6 Da
IEP (calculated)
5.716
GRAVY (calculated)
-0.178
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVFKTPFNG YSVKFSPFYE NKLAVATAQN FGILGNGRVH ILQLNPNGPV SELAAFDTAD GVYDVCWSEA HDSLVIAGSG DGSVKLYDLS LPPTNNPIRS
101: FKEHTREVHS VDYNTVRKDS FLSASWDDTV KLWTVDRNAS VRTFKEHAYC VYSAAWNPRH ADIFASASGD CTTRIWDVRE PGSTMILPAH EFEILTCDWS
201: KYDDCIIATA SVDKSIKVWD VRNYRVPISV LNGHGYAVRK VRFSPHRASA MVSCSYDMTV CMWDYMVEDA LIGRYDHHTE FAVGVDMSVL VEGLLASTGW
301: DELVYVWQHG MDPRAS
101: FKEHTREVHS VDYNTVRKDS FLSASWDDTV KLWTVDRNAS VRTFKEHAYC VYSAAWNPRH ADIFASASGD CTTRIWDVRE PGSTMILPAH EFEILTCDWS
201: KYDDCIIATA SVDKSIKVWD VRNYRVPISV LNGHGYAVRK VRFSPHRASA MVSCSYDMTV CMWDYMVEDA LIGRYDHHTE FAVGVDMSVL VEGLLASTGW
301: DELVYVWQHG MDPRAS
001: MPVFKAPFNG YSVKFSPFYE SRLAVATAQN FGILGNGRIH VLELAPGAPG VTESVSYDTA DAVYDVCWSE SHDSVLIAAI GDGSVKIYDT ALPPPSNPIR
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
Arabidopsis Description
PEX7Peroxisome biogenesis protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XF57]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.