Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016170_P001 | Maize | cytosol | 98.13 | 98.75 |
| Os02t0245100-01 | Rice | cytosol, golgi, plastid | 92.21 | 91.93 |
| TraesCS3D01G373900.1 | Wheat | cytosol | 88.47 | 89.59 |
| GSMUA_Achr6P14510_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 70.09 | 70.75 |
| PGSC0003DMT400022498 | Potato | cytosol | 63.55 | 64.56 |
| PGSC0003DMT400023242 | Potato | cytosol | 63.24 | 64.24 |
| Solyc03g062940.2.1 | Tomato | cytosol | 62.93 | 63.92 |
| Bra032295.1-P | Field mustard | cytosol | 62.93 | 63.72 |
| CDX99799 | Canola | cytosol | 62.93 | 63.72 |
| CDY50786 | Canola | cytosol | 62.93 | 63.72 |
| CDY43325 | Canola | cytosol | 62.62 | 63.41 |
| Bra010844.1-P | Field mustard | cytosol | 62.31 | 63.09 |
| AT1G29260.1 | Thale cress | cytosol | 62.31 | 63.09 |
| KRH21268 | Soybean | cytosol | 62.31 | 62.89 |
| CDX90175 | Canola | cytosol | 61.99 | 62.78 |
| KRH11018 | Soybean | cytosol | 59.81 | 62.34 |
| VIT_10s0003g01320.t01 | Wine grape | cytosol | 64.8 | 53.33 |
| HORVU3Hr1G082800.3 | Barley | cytosol, mitochondrion | 53.27 | 53.11 |
| GSMUA_Achr10P... | Banana | mitochondrion | 49.53 | 49.69 |
| EER97107 | Sorghum | cytosol | 23.36 | 18.61 |
| EES01357 | Sorghum | nucleus | 22.74 | 16.11 |
| OQU82815 | Sorghum | mitochondrion | 22.74 | 15.9 |
| EES15567 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 22.43 | 15.03 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 23.68 | 12.5 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:23.4.1.1.2 | EntrezGene:8085582 | UniProt:C5XYZ8 | EnsemblPlants:EES04830 | ProteinID:EES04830 |
| ProteinID:EES04830.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006625 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF183 | SMART:SM00320 |
| EnsemblPlantsGene:SORBI_3004G106700 | SUPFAM:SSF50978 | unigene:Sbi.5634 | UniParc:UPI0001A8522F | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002451854.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr4:+:10186726..10190456
Molecular Weight (calculated)
35347.7 Da
IEP (calculated)
6.387
GRAVY (calculated)
-0.109
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAFKAPAPG FAVRFSPFHE NRLLAATSQH FGLVGNGHLI VLDLAAAGPG PGAAPVPVFS FPTSDALFDC AWSESHDSLC AAASGDGSVR LFDAALPPAQ
101: NPVRLLREHA REVHGLDWNP VRRDAFISAS WDDTLKLWSP DRPASVRTFR GHEYCVYAAA WSARHPDVFA SASGDRTARV WDVRDPAPTL ILPAHDHEVL
201: SLDWDKYDPS ILATASVDKS IRVWDVRAPR APIAQLAGHG YAVKRVRFSP HRQGMLMSCS YDMTVCMWDY RAEDALLARY NHHTEFVAGI DMSVLVDGLL
301: ASTGWDEMVY VWPFGTDPRA M
101: NPVRLLREHA REVHGLDWNP VRRDAFISAS WDDTLKLWSP DRPASVRTFR GHEYCVYAAA WSARHPDVFA SASGDRTARV WDVRDPAPTL ILPAHDHEVL
201: SLDWDKYDPS ILATASVDKS IRVWDVRAPR APIAQLAGHG YAVKRVRFSP HRQGMLMSCS YDMTVCMWDY RAEDALLARY NHHTEFVAGI DMSVLVDGLL
301: ASTGWDEMVY VWPFGTDPRA M
001: MPVFKAPFNG YSVKFSPFYE SRLAVATAQN FGILGNGRIH VLELAPGAPG VTESVSYDTA DAVYDVCWSE SHDSVLIAAI GDGSVKIYDT ALPPPSNPIR
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
Arabidopsis Description
PEX7Peroxisome biogenesis protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XF57]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.