CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
plasma membrane 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G049100.1	Wheat	cytosol, golgi	63.64	92.58
HORVU3Hr1G013790.1	Barley	cytosol	63.41	92.26
TraesCS3D01G074700.1	Wheat	cytosol, golgi	63.41	92.26
TraesCS3A01G074900.1	Wheat	cytosol	63.41	92.26
Os01t0150000-02	Rice	plasma membrane	61.42	89.35
GSMUA_Achr6P05060_001	Banana	cytosol	56.54	82.26
CDX73389	Canola	cytosol	56.1	81.61
CDY40211	Canola	cytosol	56.1	81.61
Bra007154.1-P	Field mustard	cytosol	55.88	81.29
KRH73434	Soybean	cytosol	55.65	81.23
GSMUA_Achr10P...	Banana	cytosol	55.43	80.65
VIT_13s0019g01260.t01	Wine grape	cytosol	54.99	80.0
KRH14706	Soybean	cytosol, mitochondrion	54.77	79.94
PGSC0003DMT400060224	Potato	cytosol	54.77	79.68
AT3G55360.1	Thale cress	cytosol, nucleus, plasma membrane	54.77	79.68
Solyc05g054490.2.1	Tomato	nucleus	54.55	79.35
Zm00001d008622_P002	Maize	plastid	71.4	77.22

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	Gene3D:3.10.20.90	MapMan:5.1.6.1.4	UniProt:C5XPZ2	EnsemblPlants:EES02478	ProteinID:EES02478
ProteinID:EES02478.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005886	GO:GO:0006629	GO:GO:0006665
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009922
GO:GO:0009987	GO:GO:0010025	GO:GO:0010091	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016627	GO:GO:0016740	GO:GO:0030154	GO:GO:0042335	GO:GO:0055114	GO:GO:1905499
InterPro:IPR001104	PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF28	EnsemblPlantsGene:SORBI_3003G071600
TMHMM:TMhelix	UniParc:UPI00081AD772	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:6087430..6092352

Molecular Weight (calculated)

50601.8 Da

IEP (calculated)

10.155

GRAVY (calculated)

0.010

Length

451 amino acids

Sequence
(BLAST)

001: MDPVHAPAPG VSTGQAGLGQ MRETPIIHPW RFQALVSPKR DLSLQDVVVV VVQLVSPIRC FTSFAPVCRR HITPVGPTPP TCTRAHLPAA GIKYATSARP
101: LPRRSVSTSL HVSTATPAGS SSPSRLSLSL PALPRLPAGG RMKVTVVSRS GREVVKGGID LKDSAKVADL QEAIHARTKK YYPSRQRLTL PLQPGKGGKP
201: VVLNPRASLS EYCEKGSGSL TVVFKDLGTQ VYYSTLFFFE YLGPLIIYPM FYYLPVYKYF GYEGERIIHP VQTYAMYYWC FHYFKRIMET FFVHRFSHAT
301: SPLSNVFRNC AYYWTFGAYI AYYCNHPLYT PVSDLQMKIG FGFGIICQIA NFYCHILLRN LRSPSGSGGY QIPRGFLFNI VTCANYTTEI YQWVGFNIAT
401: QTVAGYIFLI VAAAIMTNWA LGKHSRLKKL FDGKDGRPKY PRRWVILPPF L

Best Arabidopsis Sequence Match ( AT3G55360.1 )
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VTPGSKDKPV VLNSKKSLKE YCDGNNNSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKFLG YGEDCVIHPV QTYAMYYWCF HYFKRILETF FVHRFSHATS PIGNVFRNCA YYWSFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGAGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TIAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Arabidopsis Description

ECRTSC13 [Source:UniProtKB/TrEMBL;Acc:A0A178VGP2]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.