Factsheet for PGSC0003DMT400060224

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054490.2.1	Tomato	nucleus	97.42	97.42
VIT_13s0019g01260.t01	Wine grape	cytosol	83.55	83.55
KRH73434	Soybean	cytosol	83.23	83.5
CDX73389	Canola	cytosol	82.58	82.58
KRH14706	Soybean	cytosol, mitochondrion	82.26	82.52
CDY40211	Canola	cytosol	82.26	82.26
Bra007154.1-P	Field mustard	cytosol	81.94	81.94
Os01t0150000-02	Rice	plasma membrane	81.29	81.29
AT3G55360.1	Thale cress	cytosol, nucleus, plasma membrane	81.29	81.29
HORVU3Hr1G013790.1	Barley	cytosol	78.06	78.06
TraesCS3A01G074900.1	Wheat	cytosol	78.06	78.06
TraesCS3D01G074700.1	Wheat	cytosol, golgi	78.06	78.06
TraesCSU01G049100.1	Wheat	cytosol, golgi	78.06	78.06
GSMUA_Achr6P05060_001	Banana	cytosol	76.13	76.13
GSMUA_Achr10P...	Banana	cytosol	76.13	76.13
Zm00001d008622_P002	Maize	plastid	78.71	58.51
EES02478	Sorghum	peroxisome, plasma membrane, plastid	79.68	54.77

Protein Annotations

EntrezGene:102581846	InterPro:3-oxo-5_a-steroid_4-DH_C	Gene3D:3.10.20.90	MapMan:5.1.6.1.4	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016627	GO:GO:0055114	InterPro:IPR001104
UniProt:M1C5F4	PFAM:PF02544	EnsemblPlantsGene:PGSC0003DMG400023428	PGSC:PGSC0003DMG400023428	EnsemblPlants:PGSC0003DMT400060224	PFscan:PS50244
PANTHER:PTHR10556	PANTHER:PTHR10556:SF28	TMHMM:TMhelix	UniParc:UPI000296E259	RefSeq:XP_006345960.1	RefSeq:XP_015163576.1

Description

TSC13 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023428]

Coordinates

chr5:-:50250125..50254609

Molecular Weight (calculated)

36118.1 Da

IEP (calculated)

10.024

GRAVY (calculated)

-0.042

Length

310 amino acids

Sequence
(BLAST)

001: MKVLVVTRSG KELIKGGLEL NDSATVADLQ EAIHKRTRKF YPSRQRLTLP VQPGSKERPT VLHYQKSLSE YTKGSTGELT VVFKDLGPQV KYSTLFFFEY
101: LGPLLLYPIF YYFPVYKYFG YKEERVIHPV QTYALYYWCF HYFKRIMETF FVHRFSHATS PIANVFRNCA YYWSFGAFIA YFVNHPLYTP VSDLQMKIGF
201: GFGIVCQVAN LYCHLLLRNL RSPSGNGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNVATQ TVAGYIFMIV AASIMTNWAL GKHRRLKKLF DGKEGRPKYP
301: RRWVILPPFL

Best Arabidopsis Sequence Match ( AT3G55360.1 )
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VTPGSKDKPV VLNSKKSLKE YCDGNNNSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKFLG YGEDCVIHPV QTYAMYYWCF HYFKRILETF FVHRFSHATS PIGNVFRNCA YYWSFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGAGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TIAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Arabidopsis Description

ECRTSC13 [Source:UniProtKB/TrEMBL;Acc:A0A178VGP2]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.