Factsheet for Zm00001d008622_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
peroxisome 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G074700.1	Wheat	cytosol, golgi	68.82	92.58
TraesCSU01G049100.1	Wheat	cytosol, golgi	68.59	92.26
HORVU3Hr1G013790.1	Barley	cytosol	68.35	91.94
TraesCS3A01G074900.1	Wheat	cytosol	68.35	91.94
Os01t0150000-02	Rice	plasma membrane	66.43	89.35
GSMUA_Achr6P05060_001	Banana	cytosol	61.87	83.23
CDX73389	Canola	cytosol	60.91	81.94
CDY40211	Canola	cytosol	60.91	81.94
Bra007154.1-P	Field mustard	cytosol	60.67	81.61
GSMUA_Achr10P...	Banana	cytosol	60.43	81.29
VIT_13s0019g01260.t01	Wine grape	cytosol	59.95	80.65
KRH73434	Soybean	cytosol	59.47	80.26
AT3G55360.1	Thale cress	cytosol, nucleus, plasma membrane	59.47	80.0
KRH14706	Soybean	cytosol, mitochondrion	58.51	78.96
PGSC0003DMT400060224	Potato	cytosol	58.51	78.71
Solyc05g054490.2.1	Tomato	nucleus	58.51	78.71
EES02478	Sorghum	peroxisome, plasma membrane, plastid	77.22	71.4

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	Gene3D:3.10.20.90	MapMan:5.1.6.1.4	UniProt:A0A1D6FEB3	ProteinID:AQK90310.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0005886	GO:GO:0006629	GO:GO:0006665	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009922	GO:GO:0009987	GO:GO:0010025
GO:GO:0010091	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016627	GO:GO:0016740
GO:GO:0030154	GO:GO:0042335	GO:GO:0055114	GO:GO:1905499	InterPro:IPR001104	PFAM:PF02544
PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF28	TMHMM:TMhelix	UniParc:UPI0008445F64	EnsemblPlantsGene:Zm00001d008622
EnsemblPlants:Zm00001d008622_P002	EnsemblPlants:Zm00001d008622_T002	SEG:seg	:	:	:

Description

Synaptic glycoprotein SC2

Coordinates

chr8:-:15000378..15005452

Molecular Weight (calculated)

47022.6 Da

IEP (calculated)

10.326

GRAVY (calculated)

-0.057

Length

417 amino acids

Sequence
(BLAST)

001: MLLLLRVWGA VDTVHIKMLS HITPVGVGPT PPTCTLPSPA PPRDQIRRLR PSTPSPPPSP LLSSPLPRIH GRRQQAATRR SSRLSPRSAA SLPRLPVGGR
101: MKVTVVSRSG REVVKGGIDL KDSAKVADLQ EAIHARTKKY YPSRQRLTLP LQPGKGGKPV VLSPKASLLE YCEKGSGSLT VVFKDLGPQV YYSTLFFFEY
201: LGPLIIYPMF YYLPVYKYFG HEGERAMHPV QTYAMYYWCF HYFKRIMETF FVHRFSHATS PLSNVFRNCA YYWTFGAYIA YYCNHPLYTP VSDLQMKIGF
301: GFGVVCQVAN FYCHILLRNL RSPSGSGGYQ IPRGFLFNIV TCANYTTEIY QWVGFNIATQ TVAGYVFLVV AAGIMTNWAL GKHSRLKKAS AVLPCLFDGK
401: DGRPKYPRRW VILPPFL

Best Arabidopsis Sequence Match ( AT3G55360.1 )
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VTPGSKDKPV VLNSKKSLKE YCDGNNNSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKFLG YGEDCVIHPV QTYAMYYWCF HYFKRILETF FVHRFSHATS PIGNVFRNCA YYWSFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGAGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TIAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Arabidopsis Description

ECRTSC13 [Source:UniProtKB/TrEMBL;Acc:A0A178VGP2]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.