CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73434	Soybean	cytosol	97.73	97.73
VIT_13s0019g01260.t01	Wine grape	cytosol	85.76	85.48
PGSC0003DMT400060224	Potato	cytosol	82.52	82.26
Solyc05g054490.2.1	Tomato	nucleus	82.2	81.94
CDX73389	Canola	cytosol	81.55	81.29
CDY40211	Canola	cytosol	81.55	81.29
Bra007154.1-P	Field mustard	cytosol	81.23	80.97
Os01t0150000-02	Rice	plasma membrane	81.23	80.97
AT3G55360.1	Thale cress	cytosol, nucleus, plasma membrane	80.58	80.32
HORVU3Hr1G013790.1	Barley	cytosol	79.29	79.03
GSMUA_Achr6P05060_001	Banana	cytosol	78.96	78.71
TraesCS3A01G074900.1	Wheat	cytosol	78.96	78.71
TraesCSU01G049100.1	Wheat	cytosol, golgi	78.96	78.71
TraesCS3D01G074700.1	Wheat	cytosol, golgi	78.64	78.39
GSMUA_Achr10P...	Banana	cytosol	76.7	76.45
Zm00001d008622_P002	Maize	plastid	78.96	58.51
EES02478	Sorghum	peroxisome, plasma membrane, plastid	79.94	54.77

Protein Annotations

EntrezGene:100780327	InterPro:3-oxo-5_a-steroid_4-DH_C	Gene3D:3.10.20.90	MapMan:5.1.6.1.4	EMBL:ACUP02008518	EnsemblPlantsGene:GLYMA_14G043500
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0016627	GO:GO:0042761	GO:GO:0055114	UniProt:I1M7C1
InterPro:IPR001104	ProteinID:KRH14705.1	EnsemblPlants:KRH14706	ProteinID:KRH14706	ProteinID:KRH14706.1	ProteinID:KRH14707.1
PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF28	SUPFAM:SSF54236	TMHMM:TMhelix
UniParc:UPI000233BF9C	InterPro:Ubiquitin-like_domsf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:3316009..3320127

Molecular Weight (calculated)

35899.7 Da

IEP (calculated)

9.939

GRAVY (calculated)

-0.085

Length

309 amino acids

Sequence
(BLAST)

001: MKVTVVSRSG REVVKGGVEL SDSATIADLQ EAIHKRTKKY PSRQRLTLPV QPGSKERPVV LNYKKSLKDY TSGNSETLTV VFKDLGPQVS YRTLFFCEYL
101: GPLLLYPVFY YLPVYQYFGY KGERVIHPVQ TYALYYWCFH YAKRILETFF VHRFSHATSP LSNVFRNCAY YWTFGSYIAY YVNHPLYTPV NDLQMKIGFA
201: IGILCQISNF YCHIILKNLR SPGGEGGYQI PRGFLFNIVT CANYTTEIYQ WLGFNIATQT VAGYIFLVVA TFIMTNWALA KHRRLKKLFD GKEGRPRYPR
301: RWVTLPPFL

Best Arabidopsis Sequence Match ( AT3G55360.1 )
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VTPGSKDKPV VLNSKKSLKE YCDGNNNSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKFLG YGEDCVIHPV QTYAMYYWCF HYFKRILETF FVHRFSHATS PIGNVFRNCA YYWSFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGAGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TIAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Arabidopsis Description

ECRTSC13 [Source:UniProtKB/TrEMBL;Acc:A0A178VGP2]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.