Factsheet for Solyc05g054490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060224	Potato	cytosol	97.42	97.42
VIT_13s0019g01260.t01	Wine grape	cytosol	84.84	84.84
KRH73434	Soybean	cytosol	82.9	83.17
KRH14706	Soybean	cytosol, mitochondrion	81.94	82.2
CDX73389	Canola	cytosol	81.61	81.61
CDY40211	Canola	cytosol	81.29	81.29
Os01t0150000-02	Rice	plasma membrane	81.29	81.29
Bra007154.1-P	Field mustard	cytosol	80.97	80.97
AT3G55360.1	Thale cress	cytosol, nucleus, plasma membrane	80.97	80.97
HORVU3Hr1G013790.1	Barley	cytosol	77.74	77.74
TraesCS3A01G074900.1	Wheat	cytosol	77.74	77.74
TraesCS3D01G074700.1	Wheat	cytosol, golgi	77.74	77.74
TraesCSU01G049100.1	Wheat	cytosol, golgi	77.74	77.74
GSMUA_Achr6P05060_001	Banana	cytosol	76.45	76.45
GSMUA_Achr10P...	Banana	cytosol	75.81	75.81
Zm00001d008622_P002	Maize	plastid	78.71	58.51
EES02478	Sorghum	peroxisome, plasma membrane, plastid	79.35	54.55

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	Gene3D:3.10.20.90	MapMan:5.1.6.1.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016627
GO:GO:0042761	GO:GO:0055114	InterPro:IPR001104	UniProt:K4C2C7	PFAM:PF02544	PFscan:PS50244
PANTHER:PTHR10556	PANTHER:PTHR10556:SF28	SUPFAM:SSF54236	EnsemblPlantsGene:Solyc05g054490.2	EnsemblPlants:Solyc05g054490.2.1	TMHMM:TMhelix
UniParc:UPI0002766AE7	InterPro:Ubiquitin-like_domsf	:	:	:	:

Description

No Description!

Coordinates

chr5:-:64407803..64412807

Molecular Weight (calculated)

36233.2 Da

IEP (calculated)

10.024

GRAVY (calculated)

-0.059

Length

310 amino acids

Sequence
(BLAST)

001: MKVLVVTRSG KELIKGGLEL NESATVADLQ EAIHKRTRKY YPSRQRLTLP IQPGSKERPT VLHYQKSLNE YTKGSTSELT VVFKDLGPQV KYSTLFFFEY
101: LGPLLLYPIF YYFPVYKFFG YKEERVIHPV QTYALYYWCF HYFKRIMETF FVHRFSHATS PISNVFRNCA YYWSFGAFIA YFVNHPLYTP VSDLQMKIGF
201: GFGIVCQVAN LYCHLLLRNL RSPSGNGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TVAGYIFMIV AASIMTNWAL GKHRRLKKLF DGKEGRPKYP
301: RRWVILPPFL

Best Arabidopsis Sequence Match ( AT3G55360.1 )
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VTPGSKDKPV VLNSKKSLKE YCDGNNNSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKFLG YGEDCVIHPV QTYAMYYWCF HYFKRILETF FVHRFSHATS PIGNVFRNCA YYWSFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGAGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TIAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Arabidopsis Description

ECRTSC13 [Source:UniProtKB/TrEMBL;Acc:A0A178VGP2]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.