Factsheet for TraesCS3D01G074700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G049100.1	Wheat	cytosol, golgi	99.68	99.68
HORVU3Hr1G013790.1	Barley	cytosol	99.35	99.35
TraesCS3A01G074900.1	Wheat	cytosol	99.35	99.35
Os01t0150000-02	Rice	plasma membrane	90.0	90.0
GSMUA_Achr6P05060_001	Banana	cytosol	81.61	81.61
CDX73389	Canola	cytosol	80.65	80.65
CDY40211	Canola	cytosol	80.65	80.65
Bra007154.1-P	Field mustard	cytosol	80.32	80.32
GSMUA_Achr10P...	Banana	cytosol	80.0	80.0
VIT_13s0019g01260.t01	Wine grape	cytosol	79.35	79.35
KRH73434	Soybean	cytosol	79.03	79.29
AT3G55360.1	Thale cress	cytosol, nucleus, plasma membrane	78.71	78.71
KRH14706	Soybean	cytosol, mitochondrion	78.39	78.64
PGSC0003DMT400060224	Potato	cytosol	78.06	78.06
Solyc05g054490.2.1	Tomato	nucleus	77.74	77.74
Zm00001d008622_P002	Maize	plastid	92.58	68.82
EES02478	Sorghum	peroxisome, plasma membrane, plastid	92.26	63.41

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	Gene3D:3.10.20.90	MapMan:5.1.6.1.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005886
GO:GO:0006629	GO:GO:0006665	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009922	GO:GO:0009987	GO:GO:0010025	GO:GO:0010091	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016627	GO:GO:0016740	GO:GO:0030154	GO:GO:0042335
GO:GO:1905499	InterPro:IPR001104	PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF28
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G074700	EnsemblPlants:TraesCS3D01G074700.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:-:35893328..35896872

Molecular Weight (calculated)

35563.3 Da

IEP (calculated)

9.815

GRAVY (calculated)

0.008

Length

310 amino acids

Sequence
(BLAST)

001: MKVSVVSRSG REVVKGGIEL KDSAKVADLQ EAIHAKTKKY YPARQRLTLP AQPGKSGKPV VLSQKASLSE YCEKGSGSLT VVFKDLGPQV YYSTLFFWEY
101: VGPLIIYPIF YYLPVYKYFG YEGERVIHPV QTYAMYYFCF HYFKRIMETF FVHRFSHATS PVSNVFRNCA YYWTFGAYIA YYCNHPLYTP VSDLQMKIGF
201: GIGVVCQIAN FYCHILLRNL RSPTGSGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TVAGYVFLAV AAAIMTNWAL GKHSRLRKLF DGKDGRPKYP
301: RRWVILPPFL

Best Arabidopsis Sequence Match ( AT3G55360.1 )
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VTPGSKDKPV VLNSKKSLKE YCDGNNNSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKFLG YGEDCVIHPV QTYAMYYWCF HYFKRILETF FVHRFSHATS PIGNVFRNCA YYWSFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGAGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TIAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Arabidopsis Description

ECRTSC13 [Source:UniProtKB/TrEMBL;Acc:A0A178VGP2]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.