CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40211	Canola	cytosol	99.35	99.35
AT3G55360.1	Thale cress	cytosol, nucleus, plasma membrane	97.1	97.1
VIT_13s0019g01260.t01	Wine grape	cytosol	82.9	82.9
PGSC0003DMT400060224	Potato	cytosol	82.58	82.58
KRH73434	Soybean	cytosol	82.26	82.52
Solyc05g054490.2.1	Tomato	nucleus	81.61	81.61
KRH14706	Soybean	cytosol, mitochondrion	81.29	81.55
HORVU3Hr1G013790.1	Barley	cytosol	80.97	80.97
TraesCSU01G049100.1	Wheat	cytosol, golgi	80.97	80.97
TraesCS3A01G074900.1	Wheat	cytosol	80.65	80.65
TraesCS3D01G074700.1	Wheat	cytosol, golgi	80.65	80.65
Os01t0150000-02	Rice	plasma membrane	80.0	80.0
GSMUA_Achr6P05060_001	Banana	cytosol	78.71	78.71
GSMUA_Achr10P...	Banana	cytosol	76.45	76.45
Zm00001d008622_P002	Maize	plastid	81.94	60.91
EES02478	Sorghum	peroxisome, plasma membrane, plastid	81.61	56.1

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	Gene3D:3.10.20.90	MapMan:5.1.6.1.4	ProteinID:ACR56738.1	unigene:Bna.1533	EnsemblPlants:CDX73389
ProteinID:CDX73389	ProteinID:CDX73389.1	GO:D7F5L0	UniProt:D7F5L0	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016627	GO:GO:0050343
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00108858001	InterPro:IPR001104	PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556
PANTHER:PTHR10556:SF28	TMHMM:TMhelix	UniParc:UPI0001D91FE8	SEG:seg	:	:

Description

BnaC08g26140DBnaC08g26140D protein [Source:UniProtKB/TrEMBL;Acc:D7F5L0]

Coordinates

chrLK031799:+:57851..59950

Molecular Weight (calculated)

35786.5 Da

IEP (calculated)

9.790

GRAVY (calculated)

-0.010

Length

310 amino acids

Sequence
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VAPGSKDKPV VLNSKKSLKE YCDGNTDSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKYLG YGEDRVIHPV QTYAMYYWCF HYFKRIMETF FVHRFSHATS PIGNVFRNCA YYWTFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGSGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TVAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Best Arabidopsis Sequence Match ( AT3G55360.1 )
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VTPGSKDKPV VLNSKKSLKE YCDGNNNSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKFLG YGEDCVIHPV QTYAMYYWCF HYFKRILETF FVHRFSHATS PIGNVFRNCA YYWSFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGAGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TIAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Arabidopsis Description

ECRTSC13 [Source:UniProtKB/TrEMBL;Acc:A0A178VGP2]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.