Factsheet for VIT_13s0019g01260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 2
plastid 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73434	Soybean	cytosol	86.45	86.73
KRH14706	Soybean	cytosol, mitochondrion	85.48	85.76
Solyc05g054490.2.1	Tomato	nucleus	84.84	84.84
PGSC0003DMT400060224	Potato	cytosol	83.55	83.55
CDX73389	Canola	cytosol	82.9	82.9
CDY40211	Canola	cytosol	82.9	82.9
Bra007154.1-P	Field mustard	cytosol	82.58	82.58
GSMUA_Achr6P05060_001	Banana	cytosol	81.94	81.94
AT3G55360.1	Thale cress	cytosol, nucleus, plasma membrane	81.29	81.29
HORVU3Hr1G013790.1	Barley	cytosol	79.68	79.68
Os01t0150000-02	Rice	plasma membrane	79.68	79.68
TraesCSU01G049100.1	Wheat	cytosol, golgi	79.68	79.68
TraesCS3A01G074900.1	Wheat	cytosol	79.35	79.35
TraesCS3D01G074700.1	Wheat	cytosol, golgi	79.35	79.35
GSMUA_Achr10P...	Banana	cytosol	78.39	78.39
Zm00001d008622_P002	Maize	plastid	80.65	59.95
EES02478	Sorghum	peroxisome, plasma membrane, plastid	80.0	54.99

Protein Annotations

EntrezGene:100266766	InterPro:3-oxo-5_a-steroid_4-DH_C	Gene3D:3.10.20.90	MapMan:5.1.6.1.4	UniProt:A5BAZ7	EMBL:AM452889
ProteinID:CAN83052	ProteinID:CAN83052.1	ProteinID:CCB56351	ProteinID:CCB56351.1	EMBL:FN595998	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0016627	GO:GO:0042761	GO:GO:0055114	InterPro:IPR001104	PFAM:PF02544
PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF28	SUPFAM:SSF54236	TIGR:TC55204	TMHMM:TMhelix
UniParc:UPI0001524327	InterPro:Ubiquitin-like_domsf	ArrayExpress:VIT_13s0019g01260	EnsemblPlantsGene:VIT_13s0019g01260	EnsemblPlants:VIT_13s0019g01260.t01	unigene:Vvi.3186
RefSeq:XP_010658577.1	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:2891627..2895180

Molecular Weight (calculated)

36322.1 Da

IEP (calculated)

9.847

GRAVY (calculated)

-0.095

Length

310 amino acids

Sequence
(BLAST)

001: MKVTVVTRSG RELIKGGLEL DESATVVDLQ EAIHRRTKKY YPSRQRLTLP LQPGSKERPV ALNYKKSVKD YCDGNSSNLT VVFKDLGPQI SYRTLFFWEY
101: LGPLLIYPIF YFFPVYQYFG YKGERLIHPV QTYALYYWCF HYFKRIMETF FVHRFSHATS PLSNVFRNCA YYWTFGSYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVTN FYCHILLRNL RSPDGNGGYQ IPHGFLFNIV TCANYTTEIY QWVGFNIATQ TVAGYVFLVV AAAIMTNWAL AKHRRLRKLF DGKEGRPKYP
301: RRWVILPPFL

Best Arabidopsis Sequence Match ( AT3G55360.1 )
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VTPGSKDKPV VLNSKKSLKE YCDGNNNSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKFLG YGEDCVIHPV QTYAMYYWCF HYFKRILETF FVHRFSHATS PIGNVFRNCA YYWSFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGAGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TIAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Arabidopsis Description

ECRTSC13 [Source:UniProtKB/TrEMBL;Acc:A0A178VGP2]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.