Factsheet for Bra007154.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40211	Canola	cytosol	99.68	99.68
AT3G55360.1	Thale cress	cytosol, nucleus, plasma membrane	96.45	96.45
VIT_13s0019g01260.t01	Wine grape	cytosol	82.58	82.58
KRH73434	Soybean	cytosol	81.94	82.2
PGSC0003DMT400060224	Potato	cytosol	81.94	81.94
KRH14706	Soybean	cytosol, mitochondrion	80.97	81.23
Solyc05g054490.2.1	Tomato	nucleus	80.97	80.97
HORVU3Hr1G013790.1	Barley	cytosol	80.65	80.65
TraesCSU01G049100.1	Wheat	cytosol, golgi	80.65	80.65
TraesCS3A01G074900.1	Wheat	cytosol	80.32	80.32
TraesCS3D01G074700.1	Wheat	cytosol, golgi	80.32	80.32
Os01t0150000-02	Rice	plasma membrane	79.68	79.68
GSMUA_Achr6P05060_001	Banana	cytosol	78.39	78.39
GSMUA_Achr10P...	Banana	cytosol	76.13	76.13
Zm00001d008622_P002	Maize	plastid	81.61	60.67
EES02478	Sorghum	peroxisome, plasma membrane, plastid	81.29	55.88

Protein Annotations

InterPro:3-oxo-5_a-steroid_4-DH_C	Gene3D:3.10.20.90	MapMan:5.1.6.1.4	EnsemblPlantsGene:Bra007154	EnsemblPlants:Bra007154.1	EnsemblPlants:Bra007154.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0005886	GO:GO:0006629	GO:GO:0006665	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009922	GO:GO:0009987
GO:GO:0010025	GO:GO:0010091	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016627
GO:GO:0016740	GO:GO:0030154	GO:GO:0042335	GO:GO:0055114	GO:GO:1905499	InterPro:IPR001104
UniProt:M4CSG2	PFAM:PF02544	PFscan:PS50244	PANTHER:PTHR10556	PANTHER:PTHR10556:SF28	TMHMM:TMhelix
UniParc:UPI0002542A2D	SEG:seg	:	:	:	:

Description

AT3G55360 (E=7e-174) CER10, ECR, ATTSC13, TSC13 | CER10; 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH)

Coordinates

chrA09:-:27596076..27597671

Molecular Weight (calculated)

35825.5 Da

IEP (calculated)

9.845

GRAVY (calculated)

-0.041

Length

310 amino acids

Sequence
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VSPGSKDKPV VLNSKKSLKE YCDGNTDSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKYLG YGQDRVIHPV QTYAMYYWCF HYFKRIMETF FVHRFSHATS PIGNVFRNCA YYWTFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGSGGYQ IPRGFHFNIV TCANYTTEIY QWLGFNIATQ TVAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Best Arabidopsis Sequence Match ( AT3G55360.1 )
(BLAST)

001: MKVTVVSRSG REVLKAPLDL PDSATVADLQ EAFHKRAKKF YPSRQRLTLP VTPGSKDKPV VLNSKKSLKE YCDGNNNSLT VVFKDLGAQV SYRTLFFFEY
101: LGPLLIYPVF YYFPVYKFLG YGEDCVIHPV QTYAMYYWCF HYFKRILETF FVHRFSHATS PIGNVFRNCA YYWSFGAYIA YYVNHPLYTP VSDLQMKIGF
201: GFGLVCQVAN FYCHILLKNL RDPSGAGGYQ IPRGFLFNIV TCANYTTEIY QWLGFNIATQ TIAGYVFLAV AALIMTNWAL GKHSRLRKIF DGKDGKPKYP
301: RRWVILPPFL

Arabidopsis Description

ECRTSC13 [Source:UniProtKB/TrEMBL;Acc:A0A178VGP2]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.