CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 4
cytosol 1
extracellular 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037725_P001	Maize	plastid	96.43	96.43
Zm00001d037727_P001	Maize	plastid	95.78	94.86
Os05t0208000-01	Rice	cytosol, extracellular, peroxisome	92.21	92.81
TraesCS1D01G129200.2	Wheat	cytosol, extracellular, peroxisome	87.34	89.07
TraesCS1B01G142400.1	Wheat	cytosol, extracellular, peroxisome	87.34	89.07
TraesCS1A01G124600.1	Wheat	golgi, unclear	87.34	89.07
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	86.36	88.96
HORVU1Hr1G028720.1	Barley	cytosol, extracellular, peroxisome	87.01	88.74
TraesCS3D01G136800.1	Wheat	golgi	88.31	88.6
TraesCS3B01G153900.1	Wheat	golgi	87.99	88.56
TraesCS3A01G135800.1	Wheat	cytosol	87.99	88.56
HORVU3Hr1G025820.1	Barley	plasma membrane	87.34	87.91
GSMUA_Achr6P14540_001	Banana	cytosol, mitochondrion, plastid	85.06	87.63
GSMUA_Achr9P28780_001	Banana	cytosol, peroxisome, plastid	85.06	87.63
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	84.74	87.29
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	84.74	87.0
CDX92503	Canola	cytosol	81.17	83.61
PGSC0003DMT400081953	Potato	cytosol, peroxisome, plastid	80.52	83.5
Bra002259.1-P	Field mustard	cytosol	70.13	83.4
KRH42853	Soybean	endoplasmic reticulum, mitochondrion, nucleus	81.49	83.39
AT5G19760.1	Thale cress	cytosol	80.52	83.22
CDY35862	Canola	cytosol	80.52	82.94
CDY42293	Canola	cytosol	80.52	82.94
CDY44940	Canola	cytosol	80.52	82.94
Bra006516.1-P	Field mustard	cytosol	80.19	82.61
Bra020060.1-P	Field mustard	cytosol	80.19	82.61
CDX88877	Canola	cytosol	80.19	82.61
CDX70888	Canola	cytosol, extracellular, plastid	63.64	76.86
Solyc01g021740.1.1	Tomato	cytosol, peroxisome, plastid	28.9	76.07
VIT_06s0004g00470.t01	Wine grape	cytosol	77.92	69.57
EES15143	Sorghum	cytosol	38.64	36.17
KXG25746	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	28.57	29.83
KXG26414	Sorghum	plastid	27.6	28.33
OQU84127	Sorghum	golgi, plasma membrane, plastid	29.55	23.88
KXG23597	Sorghum	mitochondrion	23.05	23.83
EER91889	Sorghum	cytosol	21.75	22.64
EER95032	Sorghum	plastid	23.38	21.62
KXG38173	Sorghum	cytosol, extracellular, mitochondrion	19.48	19.61
KXG31527	Sorghum	cytosol, nucleus, peroxisome	17.21	14.97

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	MapMan:5.1.1.1	EntrezGene:8065932	UniProt:C5YUN5	EnsemblPlants:EES17872
ProteinID:EES17872	ProteinID:EES17872.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0006839
GO:GO:0008150	GO:GO:0015367	GO:GO:0015742	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153
PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF427	EnsemblPlantsGene:SORBI_3009G077400	SUPFAM:SSF103506
unigene:Sbi.3799	UniParc:UPI0001A889C6	RefSeq:XP_002439442.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:10328565..10332296

Molecular Weight (calculated)

32982.4 Da

IEP (calculated)

10.219

GRAVY (calculated)

0.072

Length

308 amino acids

Sequence
(BLAST)

001: MADAKQQPQQ TAAAAAATTG VWKTVKPFVN GGASGMLATC VIQPIDMVKV RIQLGEGSAG QVTRNMLANE GVRSFYKGLS AGLLRQATYT TARLGSFRVL
101: TNKAVEKNEG KPLPLIQKAF IGLTAGAIGA CVGSPADLAL IRMQADSTLP AAQRRNYKNA FHALYRITAD EGVLALWKGA GPTVVRAMAL NMGMLASYDQ
201: SVELFRDKLG AGEISTVVGA SAISGFFASA CSLPFDYVKT QIQKMQPDAN GKYPYTGSLD CAMKTFKSGG PFKFYTGFPV YCVRIAPHVM MTWIFLNQIQ
301: KLEKKIGI

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.