Factsheet for TraesCS3B01G153900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G136800.1	Wheat	golgi	100.0	99.67
TraesCS3A01G135800.1	Wheat	cytosol	99.35	99.35
HORVU3Hr1G025820.1	Barley	plasma membrane	99.02	99.02
Os05t0208000-01	Rice	cytosol, extracellular, peroxisome	90.85	90.85
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	87.58	89.63
Zm00001d037725_P001	Maize	plastid	89.87	89.29
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	86.6	88.63
EES17872	Sorghum	cytosol, extracellular, peroxisome, plastid	88.56	87.99
GSMUA_Achr6P14540_001	Banana	cytosol, mitochondrion, plastid	85.95	87.96
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	85.95	87.67
GSMUA_Achr9P28780_001	Banana	cytosol, peroxisome, plastid	85.62	87.63
Zm00001d037727_P001	Maize	plastid	88.89	87.46
TraesCS1B01G142400.1	Wheat	cytosol, extracellular, peroxisome	86.27	87.42
Bra002259.1-P	Field mustard	cytosol	70.59	83.4
PGSC0003DMT400081953	Potato	cytosol, peroxisome, plastid	80.07	82.49
CDX92503	Canola	cytosol	80.39	82.27
CDY35862	Canola	cytosol	80.07	81.94
CDY42293	Canola	cytosol	79.74	81.61
CDY44940	Canola	cytosol	79.74	81.61
CDX88877	Canola	cytosol	79.41	81.27
Bra006516.1-P	Field mustard	cytosol	79.41	81.27
Bra020060.1-P	Field mustard	cytosol	79.41	81.27
KRH42853	Soybean	endoplasmic reticulum, mitochondrion, nucleus	79.74	81.06
AT5G19760.1	Thale cress	cytosol	78.76	80.87
CDX70888	Canola	cytosol, extracellular, plastid	62.75	75.29
Solyc01g021740.1.1	Tomato	cytosol, peroxisome, plastid	28.76	75.21
VIT_06s0004g00470.t01	Wine grape	cytosol	78.76	69.86
TraesCS5B01G300300.2	Wheat	cytosol	38.24	36.0
TraesCS5B01G243600.1	Wheat	cytosol	36.93	34.98
TraesCS4B01G139600.1	Wheat	cytosol	28.76	28.95
TraesCS3B01G231700.3	Wheat	plasma membrane	26.8	28.67
TraesCS2B01G335300.1	Wheat	mitochondrion	27.78	28.05
TraesCS1B01G206900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	21.57	22.3
TraesCS4B01G193900.1	Wheat	plastid	22.88	21.6
TraesCS1B01G206800.1	Wheat	cytosol, mitochondrion, plastid	21.9	21.41
TraesCS5B01G102500.1	Wheat	mitochondrion	17.97	18.09
TraesCS4B01G307000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	17.65	17.65
TraesCS3B01G177000.1	Wheat	cytosol	17.65	16.67

Protein Annotations

EnsemblPlants:TraesCS3B01G153900.1	EnsemblPlantsGene:TraesCS3B01G153900	Gene3D:1.50.40.10	GO:GO:0006810	GO:GO:0008150	GO:GO:0055085
InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PANTHER:PTHR24089
PANTHER:PTHR24089:SF427	PFAM:PF00153	PFscan:PS50920	PRINTS:PR00926	SEG:seg	SUPFAM:SSF103506
MapMan:5.1.1.1	MapMan:24.2.13	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:146185966..146189686

Molecular Weight (calculated)

32572.9 Da

IEP (calculated)

10.134

GRAVY (calculated)

0.100

Length

306 amino acids

Sequence
(BLAST)

001: MADAKQQQPP QTALAASGVW KTVKPFVNGG ASGMLATCVI QPIDMVKVKI QLGEGSATSV TKKMLANEGV GSFYKGLSAG LLRQATYTTA RLGSFRVLTN
101: KAVEANEGKP LPLVQKAAIG LTAGAIGACF GSPADLALIR MQADSTLPAA QRRHYKNAFH ALYRIIADEG VLALWKGAGP TVARAMSLNM GMLASYDQSV
201: EVLRDKLGAG ELSTMLGASA VSGFFASACS LPFDYVKTQV QKMQPDATGK YPYTGSLDCA MKTLKSGGPF KFYTGFPVYC VRIAPHVMMT WIFLNQIQKV
301: EKRVGL

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.