Factsheet for HORVU3Hr1G025820.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 4
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G153900.1	Wheat	golgi	99.02	99.02
TraesCS3D01G136800.1	Wheat	golgi	99.02	98.7
TraesCS3A01G135800.1	Wheat	cytosol	98.37	98.37
Os05t0208000-01	Rice	cytosol, extracellular, peroxisome	91.5	91.5
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	87.25	89.3
Zm00001d037725_P001	Maize	plastid	89.22	88.64
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	86.27	88.29
GSMUA_Achr6P14540_001	Banana	cytosol, mitochondrion, plastid	85.62	87.63
EES17872	Sorghum	cytosol, extracellular, peroxisome, plastid	87.91	87.34
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	85.62	87.33
GSMUA_Achr9P28780_001	Banana	cytosol, peroxisome, plastid	85.29	87.29
HORVU1Hr1G028720.1	Barley	cytosol, extracellular, peroxisome	85.95	87.09
Zm00001d037727_P001	Maize	plastid	88.24	86.82
Bra002259.1-P	Field mustard	cytosol	71.24	84.17
PGSC0003DMT400081953	Potato	cytosol, peroxisome, plastid	80.72	83.17
CDX92503	Canola	cytosol	81.05	82.94
CDY35862	Canola	cytosol	80.72	82.61
CDY42293	Canola	cytosol	80.39	82.27
CDY44940	Canola	cytosol	80.39	82.27
Bra020060.1-P	Field mustard	cytosol	80.07	81.94
Bra006516.1-P	Field mustard	cytosol	79.74	81.61
CDX88877	Canola	cytosol	79.74	81.61
KRH42853	Soybean	endoplasmic reticulum, mitochondrion, nucleus	80.07	81.4
AT5G19760.1	Thale cress	cytosol	78.76	80.87
Solyc01g021740.1.1	Tomato	cytosol, peroxisome, plastid	29.09	76.07
CDX70888	Canola	cytosol, extracellular, plastid	63.07	75.69
VIT_06s0004g00470.t01	Wine grape	cytosol	79.41	70.43
HORVU5Hr1G078970.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	8.17	40.32
HORVU5Hr1G078950.1	Barley	cytosol	37.91	35.69
HORVU3Hr1G043380.11	Barley	plasma membrane, vacuole	26.8	28.47
HORVU5Hr1G069700.1	Barley	plastid	36.93	27.83
HORVU5Hr1G026160.2	Barley	mitochondrion, plastid	23.2	23.59
HORVU4Hr1G027150.1	Barley	cytosol, plasma membrane, plastid	28.43	21.75
HORVU4Hr1G056100.1	Barley	mitochondrion	22.88	19.89
HORVU4Hr1G078670.2	Barley	cytosol, mitochondrion, plasma membrane	17.97	17.97
HORVU1Hr1G050130.3	Barley	vacuole	16.34	15.48

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	MapMan:5.1.1.1	EMBL:AK357510	UniProt:F2D0V3	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:HORVU3Hr1G025820
EnsemblPlants:HORVU3Hr1G025820.1	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF427	SUPFAM:SSF103506
UniParc:UPI00003D652C	SEG:seg	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D0V3]

Coordinates

chrchr3H:-:102207824..102212302

Molecular Weight (calculated)

32649.0 Da

IEP (calculated)

10.134

GRAVY (calculated)

0.097

Length

306 amino acids

Sequence
(BLAST)

001: MADAKQQQPP QTALAASGVW KTVKPFVNGG ASGMLATCVI QPIDMVKVKI QLGEGSATSV TKKMLANEGI GSFYKGLSAG LLRQATYTTA RLGSFRVLTN
101: KAIEANEGKP LPLVQKAAIG LTAGAIGACF GSPADLALIR MQADSTLPAA QRRHYKNAFH ALYRIIADEG VLALWKGAGP TVARAMSLNM GMLASYDQSV
201: EFLRDKLGAG ELSTMLGASA VSGFFASACS LPFDYVKTQV QKMQPDATGK YPYTGSLDCA MKTLKSGGPF KFYTGFPVYC VRIAPHVMMT WIFLNQIQKV
301: EKRVGL

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.