Factsheet for Zm00001d037727_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037725_P001	Maize	plastid	97.75	98.7
EES17872	Sorghum	cytosol, extracellular, peroxisome, plastid	94.86	95.78
Zm00001d010020_P001	Maize	mitochondrion	40.84	94.07
Os05t0208000-01	Rice	cytosol, extracellular, peroxisome	92.28	93.79
TraesCS3D01G136800.1	Wheat	golgi	87.78	88.93
TraesCS3B01G153900.1	Wheat	golgi	87.46	88.89
TraesCS3A01G135800.1	Wheat	cytosol	86.82	88.24
HORVU3Hr1G025820.1	Barley	plasma membrane	86.82	88.24
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	84.57	87.96
TraesCS1B01G142400.1	Wheat	cytosol, extracellular, peroxisome	85.21	87.75
TraesCS1A01G124600.1	Wheat	golgi, unclear	85.21	87.75
TraesCS1D01G129200.2	Wheat	cytosol, extracellular, peroxisome	85.21	87.75
HORVU1Hr1G028720.1	Barley	cytosol, extracellular, peroxisome	84.89	87.42
GSMUA_Achr6P14540_001	Banana	cytosol, mitochondrion, plastid	83.92	87.29
GSMUA_Achr9P28780_001	Banana	cytosol, peroxisome, plastid	83.92	87.29
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	83.6	86.96
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	82.96	86.0
Bra002259.1-P	Field mustard	cytosol	69.77	83.78
CDX92503	Canola	cytosol	80.39	83.61
AT5G19760.1	Thale cress	cytosol	79.74	83.22
CDY44940	Canola	cytosol	79.74	82.94
CDY42293	Canola	cytosol	79.74	82.94
CDY35862	Canola	cytosol	79.74	82.94
PGSC0003DMT400081953	Potato	cytosol, peroxisome, plastid	79.1	82.83
KRH42853	Soybean	endoplasmic reticulum, mitochondrion, nucleus	80.06	82.72
CDX88877	Canola	cytosol	79.42	82.61
Bra020060.1-P	Field mustard	cytosol	79.42	82.61
Bra006516.1-P	Field mustard	cytosol	79.42	82.61
CDX70888	Canola	cytosol, extracellular, plastid	63.34	77.25
Solyc01g021740.1.1	Tomato	cytosol, peroxisome, plastid	28.3	75.21
VIT_06s0004g00470.t01	Wine grape	cytosol	76.53	68.99
Zm00001d031833_P001	Maize	mitochondrion	37.3	35.58
Zm00001d024951_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	28.94	29.7
Zm00001d048583_P001	Maize	mitochondrion	29.58	29.68
Zm00001d003511_P001	Maize	mitochondrion	27.01	27.63
Zm00001d004561_P001	Maize	plasma membrane	24.12	25.95
Zm00001d023895_P007	Maize	mitochondrion	22.51	23.49
Zm00001d032430_P002	Maize	mitochondrion	19.29	19.61
Zm00001d028753_P003	Maize	plastid	22.83	19.4
Zm00001d008974_P001	Maize	cytosol	17.68	16.42

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	MapMan:5.1.1.1	ProteinID:AQK84663.1	UniProt:B4FRG8	EMBL:BT039706
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153
PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF427	SUPFAM:SSF103506	UniParc:UPI00017B8261
EnsemblPlantsGene:Zm00001d037727	EnsemblPlants:Zm00001d037727_P001	EnsemblPlants:Zm00001d037727_T001	SEG:seg	:	:

Description

Mitochondrial dicarboxylate/tricarboxylate transporter DTC

Coordinates

chr6:-:135296144..135300165

Molecular Weight (calculated)

33533.8 Da

IEP (calculated)

10.219

GRAVY (calculated)

-0.002

Length

311 amino acids

Sequence
(BLAST)

001: MADAKQQQQQ QQQPQQAAAA ATGVWKTVKP FVNGGASGML ATCVIQPIDM VKVRIQLGEG SAGQVTRNML ANEGVRSFYK GLSAGLLRQA TYTTARLGSF
101: RVLTNKAVEK NEGKPLPLFQ KAFIGLTAGA IGACVGSPAD LALIRMQADS TLPVAQRRNY KNAFHALYRI SGDEGVLALW KGAGPTVVRA MALNMGMLAS
201: YDQSVELFRD KFGAGEISTV VGASAVSGFF ASACSLPFDY VKTQIQKMQP DANGKYPYTG SLDCAVKTFK SGGPFKFYTG FPVYCVRIAP HVMMTWIFLN
301: QIQKFEKKIG I

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.