Factsheet for TraesCS1A01G124600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
extracellular 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G129200.2	Wheat	cytosol, extracellular, peroxisome	100.0	100.0
TraesCS1B01G142400.1	Wheat	cytosol, extracellular, peroxisome	100.0	100.0
HORVU1Hr1G028720.1	Barley	cytosol, extracellular, peroxisome	99.34	99.34
Os05t0208000-01	Rice	cytosol, extracellular, peroxisome	90.73	89.54
EES17872	Sorghum	cytosol, extracellular, peroxisome, plastid	89.07	87.34
Zm00001d037725_P001	Maize	plastid	88.08	86.36
TraesCS3A01G135800.1	Wheat	cytosol	87.42	86.27
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	85.1	85.67
GSMUA_Achr9P28780_001	Banana	cytosol, peroxisome, plastid	84.77	85.62
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	84.44	85.28
Zm00001d037727_P001	Maize	plastid	87.75	85.21
GSMUA_Achr6P14540_001	Banana	cytosol, mitochondrion, plastid	84.11	84.95
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	84.11	84.95
Bra002259.1-P	Field mustard	cytosol	72.52	84.56
CDX92503	Canola	cytosol	82.78	83.61
CDY44940	Canola	cytosol	82.45	83.28
CDY42293	Canola	cytosol	82.12	82.94
Bra006516.1-P	Field mustard	cytosol	82.12	82.94
Bra020060.1-P	Field mustard	cytosol	82.12	82.94
CDX88877	Canola	cytosol	82.12	82.94
CDY35862	Canola	cytosol	82.12	82.94
AT5G19760.1	Thale cress	cytosol	81.79	82.89
KRH42853	Soybean	endoplasmic reticulum, mitochondrion, nucleus	82.12	82.39
PGSC0003DMT400081953	Potato	cytosol, peroxisome, plastid	80.79	82.15
CDX70888	Canola	cytosol, extracellular, plastid	65.23	77.25
Solyc01g021740.1.1	Tomato	cytosol, peroxisome, plastid	29.14	75.21
VIT_06s0004g00470.t01	Wine grape	cytosol	80.46	70.43
TraesCS5A01G300800.1	Wheat	cytosol	37.42	34.88
TraesCS5A01G246300.1	Wheat	cytosol	37.09	34.67
TraesCS4A01G179400.1	Wheat	cytosol	29.47	29.28
TraesCS3A01G199800.1	Wheat	plasma membrane	27.15	28.67
TraesCS2A01G317100.1	Wheat	cytosol, mitochondrion, plastid	29.14	27.41
TraesCS1A01G191900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	22.52	22.97
TraesCS4A01G110200.1	Wheat	plastid	22.52	20.99
TraesCS5A01G096600.1	Wheat	mitochondrion, plastid	18.21	18.15
TraesCS4A01G407600.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	17.88	17.65
TraesCS1A01G191800.1	Wheat	endoplasmic reticulum, mitochondrion	22.19	17.31
TraesCS3A01G149900.1	Wheat	cytosol	16.56	15.43

Protein Annotations

EnsemblPlants:TraesCS1A01G124600.1	EnsemblPlantsGene:TraesCS1A01G124600	Gene3D:1.50.40.10	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mitochondrial_sb/sol_carrier
InterPro:Mt_carrier_dom_sf	PANTHER:PTHR24089	PANTHER:PTHR24089:SF427	PFAM:PF00153	PFscan:PS50920	SUPFAM:SSF103506
MapMan:5.1.1.1	MapMan:24.2.13	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:147353585..147356881

Molecular Weight (calculated)

32361.6 Da

IEP (calculated)

9.890

GRAVY (calculated)

0.085

Length

302 amino acids

Sequence
(BLAST)

001: MADAKQQQAA APTGVWKTIK PFVNGGASGM LATCVIQPID MIKVKIQLGE GSAAQVAKTM YANEGLGSFY KGLSAGLLRQ ATYTTARLGS FRVLTNKAIE
101: ANDGKPLPLV QKAFIGLTAG AIGACVGSPA DLALIRMQAD STLPAAQRRH YKNAFHALYR ITADEGVLAL WKGAGPTVVR AMSLNMGMLA SYDQSVELFR
201: DKLGAGEYQT VIGASAISGF CAAACSLPFD YVKTQIQKMQ PDATGKYPYT GSLDCAMQTL KTGGPFKFYS GFPVYCVRIA PHVMMTWLFL NQIQKYQKKI
301: GI

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.