Factsheet for Bra006516.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88877	Canola	cytosol	100.0	100.0
Bra020060.1-P	Field mustard	cytosol	96.66	96.66
Bra002259.1-P	Field mustard	cytosol	83.61	96.53
CDX70888	Canola	cytosol, extracellular, plastid	81.27	95.29
Solyc01g005620.2.1	Tomato	plastid	85.28	85.86
PGSC0003DMT400081953	Potato	cytosol, peroxisome, plastid	84.28	84.85
KRH42853	Soybean	endoplasmic reticulum, mitochondrion, nucleus	84.95	84.39
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	82.94	82.94
GSMUA_Achr9P28780_001	Banana	cytosol, peroxisome, plastid	82.94	82.94
GSMUA_Achr6P14540_001	Banana	cytosol, mitochondrion, plastid	82.61	82.61
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	82.27	82.27
TraesCS1D01G129200.2	Wheat	cytosol, extracellular, peroxisome	82.94	82.12
TraesCS1A01G124600.1	Wheat	golgi, unclear	82.94	82.12
TraesCS1B01G142400.1	Wheat	cytosol, extracellular, peroxisome	82.94	82.12
Os05t0208000-01	Rice	cytosol, extracellular, peroxisome	83.95	82.03
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	82.27	82.0
HORVU1Hr1G028720.1	Barley	cytosol, extracellular, peroxisome	82.27	81.46
Os11t0432400-01	Rice	cytosol	82.94	80.26
Zm00001d037725_P001	Maize	plastid	82.61	80.19
EES17872	Sorghum	cytosol, extracellular, peroxisome, plastid	82.61	80.19
HORVU3Hr1G025820.1	Barley	plasma membrane	81.61	79.74
Zm00001d037727_P001	Maize	plastid	82.61	79.42
TraesCS3B01G153900.1	Wheat	golgi	81.27	79.41
TraesCS3D01G136800.1	Wheat	golgi	81.27	79.15
TraesCS3A01G135800.1	Wheat	cytosol	80.6	78.76
VIT_06s0004g00470.t01	Wine grape	cytosol	81.94	71.01
Bra013815.1-P	Field mustard	cytosol, plasma membrane, plastid	37.46	35.56
Bra038517.1-P	Field mustard	cytosol	34.78	33.02
Bra030231.1-P	Field mustard	cytosol	34.45	32.49
Bra006022.1-P	Field mustard	plasma membrane	36.12	32.24
Bra026855.1-P	Field mustard	mitochondrion	32.11	31.17
Bra020342.1-P	Field mustard	plasma membrane	31.1	30.79
Bra003170.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	29.77	29.28
Bra007046.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	29.1	28.52
Bra014840.1-P	Field mustard	cytosol, peroxisome, plastid	28.43	27.87
Bra002603.1-P	Field mustard	cytosol	28.09	25.77
Bra034186.1-P	Field mustard	plastid	26.76	25.48
Bra018517.1-P	Field mustard	cytosol	20.07	24.29
Bra022065.1-P	Field mustard	cytosol, mitochondrion, plastid	22.41	22.48
Bra017524.1-P	Field mustard	cytosol, mitochondrion, plastid	22.41	22.33
Bra024994.1-P	Field mustard	cytosol, mitochondrion, plastid	21.74	21.67
Bra021881.1-P	Field mustard	cytosol, peroxisome, plastid	18.73	18.42
Bra035205.1-P	Field mustard	cytosol, mitochondrion, plastid	18.73	17.95
Bra005690.1-P	Field mustard	cytosol	23.41	17.37

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	MapMan:5.1.1.1	EnsemblPlantsGene:Bra006516	EnsemblPlants:Bra006516.1	EnsemblPlants:Bra006516.1-P
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
InterPro:IPR018108	InterPro:IPR023395	UniProt:M4CQM7	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF427	SUPFAM:SSF103506
UniParc:UPI000253FF58	:	:	:	:	:

Description

AT5G19760 (E=4e-162) | dicarboxylate/tricarboxylate carrier (DTC)

Coordinates

chrA03:-:3870659..3872509

Molecular Weight (calculated)

31886.2 Da

IEP (calculated)

9.469

GRAVY (calculated)

0.152

Length

299 amino acids

Sequence
(BLAST)

001: MAEEKKVAPI GIWTAVKPFV NGGASGMLAT CVIQPIDMIK VRIQLGQGSA ASVTTTMLKN EGIGAFYKGL SAGLLRQATY TTARLGSFKM LTAKASEAND
101: GKPLPLYQKA LCGLTAGAIG ACVGSPADLA LIRMQADNTL PLAQRRNYTN AFHALYRISA DEGVLALWKG CGPTVVRAMA LNMGMLASYD QSAEYMRDNL
201: GLGETSTVVG ASAVSGFCAA ACSLPFDFVK TQIQKMQPDA QGKYPYTGSL DCAMQTLKSG GPLKFYTGFP VYCVRIAPHV MMTWIFLNQI TKFQKNIGM

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.