Factsheet for TraesCS3D01G136800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G153900.1	Wheat	golgi	99.67	100.0
TraesCS3A01G135800.1	Wheat	cytosol	99.02	99.35
HORVU3Hr1G025820.1	Barley	plasma membrane	98.7	99.02
Os05t0208000-01	Rice	cytosol, extracellular, peroxisome	90.55	90.85
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	87.3	89.63
Zm00001d037725_P001	Maize	plastid	89.9	89.61
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	86.32	88.63
EES17872	Sorghum	cytosol, extracellular, peroxisome, plastid	88.6	88.31
GSMUA_Achr6P14540_001	Banana	cytosol, mitochondrion, plastid	85.67	87.96
Zm00001d037727_P001	Maize	plastid	88.93	87.78
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	85.67	87.67
GSMUA_Achr9P28780_001	Banana	cytosol, peroxisome, plastid	85.34	87.63
TraesCS1D01G129200.2	Wheat	cytosol, extracellular, peroxisome	85.99	87.42
Bra002259.1-P	Field mustard	cytosol	70.36	83.4
PGSC0003DMT400081953	Potato	cytosol, peroxisome, plastid	79.8	82.49
CDX92503	Canola	cytosol	80.13	82.27
CDY35862	Canola	cytosol	79.8	81.94
CDY42293	Canola	cytosol	79.48	81.61
CDY44940	Canola	cytosol	79.48	81.61
Bra020060.1-P	Field mustard	cytosol	79.15	81.27
Bra006516.1-P	Field mustard	cytosol	79.15	81.27
CDX88877	Canola	cytosol	79.15	81.27
KRH42853	Soybean	endoplasmic reticulum, mitochondrion, nucleus	79.48	81.06
AT5G19760.1	Thale cress	cytosol	78.5	80.87
CDX70888	Canola	cytosol, extracellular, plastid	62.54	75.29
Solyc01g021740.1.1	Tomato	cytosol, peroxisome, plastid	28.66	75.21
VIT_06s0004g00470.t01	Wine grape	cytosol	78.5	69.86
TraesCS5D01G307000.1	Wheat	cytosol	38.11	36.34
TraesCS5D01G252800.1	Wheat	cytosol	36.48	34.67
TraesCS3D01G204800.2	Wheat	plasma membrane	27.04	29.02
TraesCS4D01G134300.1	Wheat	golgi	28.66	28.95
TraesCS2D01G315000.1	Wheat	plastid	27.69	28.15
TraesCS5D01G109300.2	Wheat	plastid	23.45	24.24
TraesCS1D01G195500.1	Wheat	golgi	21.17	21.96
TraesCS4D01G194800.1	Wheat	plastid	22.8	21.47
TraesCS1D01G195400.1	Wheat	golgi	21.82	19.03
TraesCS4D01G305200.1	Wheat	cytosol	18.24	18.3
TraesCS3D01G157800.1	Wheat	cytosol	17.92	16.98

Protein Annotations

EnsemblPlants:TraesCS3D01G136800.1	EnsemblPlantsGene:TraesCS3D01G136800	Gene3D:1.50.40.10	GO:GO:0006810	GO:GO:0008150	GO:GO:0055085
InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PANTHER:PTHR24089
PANTHER:PTHR24089:SF427	PFAM:PF00153	PFscan:PS50920	PRINTS:PR00926	SEG:seg	SUPFAM:SSF103506
MapMan:5.1.1.1	MapMan:24.2.13	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:95249233..95252908

Molecular Weight (calculated)

32701.1 Da

IEP (calculated)

10.134

GRAVY (calculated)

0.088

Length

307 amino acids

Sequence
(BLAST)

001: MADAKQQQQP PQTALAASGV WKTVKPFVNG GASGMLATCV IQPIDMVKVK IQLGEGSATS VTKKMLANEG VGSFYKGLSA GLLRQATYTT ARLGSFRVLT
101: NKAVEANEGK PLPLVQKAAI GLTAGAIGAC FGSPADLALI RMQADSTLPA AQRRHYKNAF HALYRIIADE GVLALWKGAG PTVARAMSLN MGMLASYDQS
201: VEVLRDKLGA GELSTMLGAS AVSGFFASAC SLPFDYVKTQ VQKMQPDATG KYPYTGSLDC AMKTLKSGGP FKFYTGFPVY CVRIAPHVMM TWIFLNQIQK
301: VEKRVGL

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.