Factsheet for TraesCS4D01G134300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G179400.1	Wheat	cytosol	100.0	100.0
TraesCS4B01G139600.1	Wheat	cytosol	99.67	99.67
Os11t0707800-01	Rice	mitochondrion	89.8	90.7
Zm00001d048583_P001	Maize	mitochondrion	90.79	89.03
HORVU4Hr1G027150.1	Barley	cytosol, plasma membrane, plastid	99.67	75.75
OQU84127	Sorghum	golgi, plasma membrane, plastid	91.12	72.7
TraesCS3D01G204800.2	Wheat	plasma membrane	66.12	70.28
TraesCS2D01G315000.1	Wheat	plastid	35.2	35.43
TraesCS5D01G307000.1	Wheat	cytosol	37.5	35.4
TraesCS5D01G252800.1	Wheat	cytosol	37.5	35.29
TraesCS5D01G109300.2	Wheat	plastid	30.59	31.31
TraesCS1D01G129200.2	Wheat	cytosol, extracellular, peroxisome	29.28	29.47
TraesCS3D01G136800.1	Wheat	golgi	28.95	28.66
TraesCS1D01G195500.1	Wheat	golgi	24.01	24.66
TraesCS4D01G194800.1	Wheat	plastid	24.67	23.01
TraesCS1D01G195400.1	Wheat	golgi	24.67	21.31
TraesCS3D01G157800.1	Wheat	cytosol	22.04	20.68
TraesCS4D01G305200.1	Wheat	cytosol	20.72	20.59

Protein Annotations

Gene3D:1.50.40.10	MapMan:2.4.2.3	MapMan:24.2.13	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0016020
GO:GO:0031966	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_uncoupling_UCP-like	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PFAM:PF00153	PRINTS:PR00784	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF622	SUPFAM:SSF103506
EnsemblPlantsGene:TraesCS4D01G134300	EnsemblPlants:TraesCS4D01G134300.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:121075378..121078564

Molecular Weight (calculated)

32327.5 Da

IEP (calculated)

10.081

GRAVY (calculated)

0.164

Length

304 amino acids

Sequence
(BLAST)

001: MAPDHGSKVD ISFAGRFTAS AIAACFAEIT TIPLDTAKVR LQLQKKAVAG DLAGPKYRGL LGTAATIAKE EGAAALWKGI VPGLHRQCIY GGLRIGLYEP
101: VKSFYVGENH VGDVPLSKKI AAGFTTGALA IAVANPTDLV KVRLQSEGKL APGVPRRYTG AMDAYAKIVR QEGVAALWTG IGPNVARNAI INAAELASYD
201: QVKQSILKLP GFKDDVVTHI LSGLGAGFFA VCVGSPVDVV KSRMMGDSAY KNTIDCFVKT LKNDGPLAFY KGFLPNFARL GSWNVIMFLT LEQVQKAFVR
301: KPAN

Best Arabidopsis Sequence Match ( AT3G54110.1 )
(BLAST)

001: MVAAGKSDLS LPKTFACSAF AACVGEVCTI PLDTAKVRLQ LQKSALAGDV TLPKYRGLLG TVGTIAREEG LRSLWKGVVP GLHRQCLFGG LRIGMYEPVK
101: NLYVGKDFVG DVPLSKKILA GLTTGALGIM VANPTDLVKV RLQAEGKLAA GAPRRYSGAL NAYSTIVRQE GVRALWTGLG PNVARNAIIN AAELASYDQV
201: KETILKIPGF TDNVVTHILS GLGAGFFAVC IGSPVDVVKS RMMGDSGAYK GTIDCFVKTL KSDGPMAFYK GFIPNFGRLG SWNVIMFLTL EQAKKYVREL
301: DASKRN

Arabidopsis Description

PUMP1UCP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V8U1]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.