Factsheet for VIT_06s0004g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005620.2.1	Tomato	plastid	74.78	86.87
KRH42853	Soybean	endoplasmic reticulum, mitochondrion, nucleus	75.07	86.05
PGSC0003DMT400081953	Potato	cytosol, peroxisome, plastid	73.62	85.52
Bra002259.1-P	Field mustard	cytosol	62.61	83.4
CDY42293	Canola	cytosol	71.88	82.94
CDY44940	Canola	cytosol	71.88	82.94
CDX92503	Canola	cytosol	71.59	82.61
Bra020060.1-P	Field mustard	cytosol	71.59	82.61
CDY35862	Canola	cytosol	71.3	82.27
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	71.3	82.0
CDX88877	Canola	cytosol	71.01	81.94
Bra006516.1-P	Field mustard	cytosol	71.01	81.94
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	71.01	81.94
AT5G19760.1	Thale cress	cytosol	70.72	81.88
GSMUA_Achr6P14540_001	Banana	cytosol, mitochondrion, plastid	70.72	81.61
VIT_08s0007g07270.t01	Wine grape	cytosol, peroxisome, plastid	70.43	81.54
GSMUA_Achr9P28780_001	Banana	cytosol, peroxisome, plastid	70.43	81.27
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	70.14	80.94
TraesCS1D01G129200.2	Wheat	cytosol, extracellular, peroxisome	70.43	80.46
TraesCS1A01G124600.1	Wheat	golgi, unclear	70.43	80.46
TraesCS1B01G142400.1	Wheat	cytosol, extracellular, peroxisome	70.43	80.46
HORVU1Hr1G028720.1	Barley	cytosol, extracellular, peroxisome	69.86	79.8
Os05t0208000-01	Rice	cytosol, extracellular, peroxisome	70.43	79.41
HORVU3Hr1G025820.1	Barley	plasma membrane	70.43	79.41
TraesCS3B01G153900.1	Wheat	golgi	69.86	78.76
TraesCS3D01G136800.1	Wheat	golgi	69.86	78.5
TraesCS3A01G135800.1	Wheat	cytosol	69.57	78.43
Os11t0432400-01	Rice	cytosol	69.86	77.99
EES17872	Sorghum	cytosol, extracellular, peroxisome, plastid	69.57	77.92
Zm00001d037725_P001	Maize	plastid	69.28	77.6
Zm00001d037727_P001	Maize	plastid	68.99	76.53
CDX70888	Canola	cytosol, extracellular, plastid	56.52	76.47
VIT_00s0827g00030.t01	Wine grape	extracellular	17.97	64.58
VIT_16s0039g00630.t01	Wine grape	cytosol	22.03	56.3
VIT_00s2349g00010.t01	Wine grape	cytosol	33.33	36.16
VIT_00s0407g00020.t01	Wine grape	mitochondrion	14.2	34.75
VIT_18s0001g07320.t01	Wine grape	cytosol	32.46	34.67
VIT_01s0026g02750.t01	Wine grape	cytosol	26.96	33.21
VIT_06s0004g05940.t01	Wine grape	plasma membrane, vacuole	28.12	32.12
VIT_08s0007g01700.t01	Wine grape	extracellular	26.09	29.61
VIT_07s0104g01160.t01	Wine grape	cytosol	21.45	23.79
VIT_08s0217g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	20.0	22.55
VIT_02s0012g01250.t01	Wine grape	mitochondrion, plastid	20.0	20.18
VIT_09s0002g04500.t01	Wine grape	cytosol, mitochondrion, plastid	17.1	18.97
VIT_10s0003g00060.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion	15.65	17.82

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100255213	wikigene:100255213	MapMan:24.2.13	MapMan:5.1.1.1	ProteinID:CCB43809
ProteinID:CCB43809.1	UniProt:F6GUN2	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0004559
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0005975	GO:GO:0006013	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006284	GO:GO:0006810	GO:GO:0006839	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015367	GO:GO:0015742	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0022857	GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	EntrezGene:LOC100255213	wikigene:LOC100255213
InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF427
SUPFAM:SSF103506	TIGR:TC60082	UniParc:UPI00021094E0	ArrayExpress:VIT_06s0004g00470	EnsemblPlantsGene:VIT_06s0004g00470	EnsemblPlants:VIT_06s0004g00470.t01
RefSeq:XP_002285722	RefSeq:XP_002285722.1	:	:	:	:

Description

No Description!

Coordinates

chr6:-:655111..660136

Molecular Weight (calculated)

36931.4 Da

IEP (calculated)

8.642

GRAVY (calculated)

0.178

Length

345 amino acids

Sequence
(BLAST)

001: MGDEKKPKAS GVWPTIKPFV NGGTAGMLAT CVIQPIDMIK VRIQLGQGSA GEVTKTMLKN EGMGAFYKGL SAGLLRQATY TTARLGSFRI LTAKAIEAND
101: GKPLPLYQKA LCGLTAGAIG ACVGSPADLA LIRMQADATL PAAQRRHYTN AFHALYRIVA DEGVLALWKG AGPTVVRAMA LNMGMLASYD QSVEFFKDNL
201: GFGEATTIIG ASTVSGFFAA ACSLPFDYVK TQIQKMQPDA LGKYPYTGSM DCAMKTLKAG GPFKFYTGFP VYCVRIAPHV MMCVHFADDM DIPQPNPEGG
301: EVLWIMICCR SGDLYIGVQL CCHNNSIVAC VVVVARFGNL THPQK

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.