Factsheet for VIT_08s0007g07270.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010020_P001	Maize	mitochondrion	38.93	85.93
KRH58947	Soybean	cytosol	59.4	83.89
VIT_00s0827g00030.t01	Wine grape	extracellular	22.82	70.83
VIT_06s0004g00470.t01	Wine grape	cytosol	81.54	70.43
VIT_16s0039g00630.t01	Wine grape	cytosol	28.52	62.96
VIT_00s2349g00010.t01	Wine grape	cytosol	39.26	36.79
VIT_18s0001g07320.t01	Wine grape	cytosol	38.59	35.6
VIT_00s0407g00020.t01	Wine grape	mitochondrion	16.78	35.46
VIT_01s0026g02750.t01	Wine grape	cytosol	31.54	33.57
VIT_06s0004g05940.t01	Wine grape	plasma membrane, vacuole	32.89	32.45
VIT_08s0007g01700.t01	Wine grape	extracellular	30.2	29.61
VIT_07s0104g01160.t01	Wine grape	cytosol	26.17	25.08
VIT_08s0217g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	23.15	22.55
VIT_02s0012g01250.t01	Wine grape	mitochondrion, plastid	23.83	20.76
VIT_09s0002g04500.t01	Wine grape	cytosol, mitochondrion, plastid	19.8	18.97
VIT_10s0003g00060.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion	17.79	17.49

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100248729	wikigene:100248729	MapMan:24.2.13	MapMan:5.1.1.1	ProteinID:CCB55206
ProteinID:CCB55206.1	UniProt:F6HLE5	EMBL:FN595991	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810
GO:GO:0006839	GO:GO:0008150	GO:GO:0015367	GO:GO:0015742	GO:GO:0016020	GO:GO:0016021
InterPro:IPR018108	InterPro:IPR023395	EntrezGene:LOC100248729	wikigene:LOC100248729	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PFAM:PF00153	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF427	SUPFAM:SSF103506	UniParc:UPI00015CA6C4
ArrayExpress:VIT_08s0007g07270	EnsemblPlantsGene:VIT_08s0007g07270	EnsemblPlants:VIT_08s0007g07270.t01	RefSeq:XP_002281600	RefSeq:XP_002281600.1	SEG:seg

Description

No Description!

Coordinates

chr8:+:20884934..20887853

Molecular Weight (calculated)

31871.0 Da

IEP (calculated)

9.939

GRAVY (calculated)

0.117

Length

298 amino acids

Sequence
(BLAST)

001: MGEEKPKSKG VWPSVKPFVN GGASGMLATC VIQPVDMIKV RIQLGQGSAV QVTKTMLQNE GIKAFYKGLS AGLLRQATYT TTRLGSFKVL TNKAVAANDG
101: KPLPLYQKAL CGLTAGAVGA TVGSPADLSL IRMQADATLP AAQRRNYKNA FDALYRIVAD EGVLALWKGA GPTVVRAMAL NMGMLASYDQ SVEFLKDSLG
201: LGEASILVGA SAVSGFFASA FSLPFDYVKT QIQKMQPDAS GKYPYTSSWD CAMKTLKSGG PLKFYTGFPV YCVRIAPHVM LTWIFLNQVQ KLEESVGL

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.