Factsheet for VIT_08s0217g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15600_001	Banana	mitochondrion	52.61	84.74
GSMUA_Achr10P...	Banana	cytosol	59.48	81.25
AT5G01340.1	Thale cress	cytosol, mitochondrion, plastid	81.7	80.91
KRH16814	Soybean	cytosol	83.33	80.7
Os03t0292200-01	Rice	peroxisome	79.41	76.66
CDY11206	Canola	cytosol	82.35	74.56
KRH72424	Soybean	cytosol	83.01	74.27
TraesCS4A01G110200.1	Wheat	plastid	77.78	73.46
TraesCS4B01G193900.1	Wheat	plastid	77.78	73.46
TraesCS4D01G194800.1	Wheat	plastid	78.1	73.31
PGSC0003DMT400028643	Potato	cytosol, mitochondrion, nucleus	82.68	73.12
EER95032	Sorghum	plastid	77.12	70.87
HORVU4Hr1G056100.1	Barley	mitochondrion	77.45	67.33
Zm00001d028753_P003	Maize	plastid	78.43	65.57
Bra005690.1-P	Field mustard	cytosol	82.35	62.53
CDX80777	Canola	cytosol	81.7	61.58
VIT_01s0026g02750.t01	Wine grape	cytosol	24.84	27.14
VIT_09s0002g04500.t01	Wine grape	cytosol, mitochondrion, plastid	26.14	25.72
VIT_07s0104g01160.t01	Wine grape	cytosol	25.82	25.4
VIT_00s0407g00020.t01	Wine grape	mitochondrion	11.44	24.82
VIT_00s2349g00010.t01	Wine grape	cytosol	25.16	24.21
VIT_08s0007g01700.t01	Wine grape	extracellular	23.53	23.68
VIT_18s0001g07320.t01	Wine grape	cytosol	24.84	23.53
VIT_06s0004g05940.t01	Wine grape	plasma membrane, vacuole	22.88	23.18
VIT_08s0007g07270.t01	Wine grape	cytosol, peroxisome, plastid	22.55	23.15
VIT_02s0012g01250.t01	Wine grape	mitochondrion, plastid	25.82	23.1
VIT_10s0003g00060.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion	20.59	20.79
VIT_16s0039g00630.t01	Wine grape	cytosol	9.15	20.74
VIT_06s0004g00470.t01	Wine grape	cytosol	22.55	20.0
VIT_00s0827g00030.t01	Wine grape	extracellular	5.56	17.71

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100260918	wikigene:100260918	MapMan:24.2.13	UniProt:A5C415	EMBL:AM481451
ProteinID:CAN81800	ProteinID:CAN81800.1	ProteinID:CBI18247	ProteinID:CBI18247.3	EMBL:FN594969	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0015141	GO:GO:0015741
GO:GO:0015744	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR018108
InterPro:IPR023395	EntrezGene:LOC100260918	wikigene:LOC100260918	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF396	SUPFAM:SSF103506
TIGR:TC61386	TIGR:TC68118	UniParc:UPI0001524C90	ArrayExpress:VIT_08s0217g00010	EnsemblPlantsGene:VIT_08s0217g00010	EnsemblPlants:VIT_08s0217g00010.t01
unigene:Vvi.15276	RefSeq:XP_002263020	RefSeq:XP_002263020.1	:	:	:

Description

No Description!

Coordinates

chr8:+:8077325..8081873

Molecular Weight (calculated)

33294.0 Da

IEP (calculated)

10.652

GRAVY (calculated)

-0.018

Length

306 amino acids

Sequence
(BLAST)

001: MSESKKTTIP PYVKALSGSI GGIVEASCLQ PIDVIKTRLQ LDTSGTYKGI IHCGATVYRT EGVRALWKGL TPFATHLTLK YTLRMGSNAL FQSAFKDSQT
101: GQLSNTGRLL SGFGAGVLEA LVIVTPFEVV KIRLQQQRGL SPELLKYKGP IHCARTIIRE EGLRGLWAGA APTVMRNGTN QAAMFTAKNA FDGILWKKQE
201: GDGKVLQPWQ SMISGFLAGT AGPVCTGPFD VVKTRLMAQG RAGGKLKYKG MVHAIRTIFA EEGLLALWKG LLPRLMRIPP GQAIMWGVAD QVTGFYERRH
301: IHNAPL

Best Arabidopsis Sequence Match ( AT5G01340.1 )
(BLAST)

001: MATRTESKKQ IPPYMKAVSG SLGGVVEACC LQPIDVIKTR LQLDRVGAYK GIAHCGSKVV RTEGVRALWK GLTPFATHLT LKYTLRMGSN AMFQTAFKDS
101: ETGKVSNRGR FLSGFGAGVL EALAIVTPFE VVKIRLQQQK GLSPELFKYK GPIHCARTIV REESILGLWS GAAPTVMRNG TNQAVMFTAK NAFDILLWNK
201: HEGDGKILQP WQSMISGFLA GTAGPFCTGP FDVVKTRLMA QSRDSEGGIR YKGMVHAIRT IYAEEGLVAL WRGLLPRLMR IPPGQAIMWA VADQVTGLYE
301: MRYLRNAPL

Arabidopsis Description

SFC1Mitochondrial succinate-fumarate transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M038]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.