Factsheet for TraesCS4B01G193900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G110200.1	Wheat	plastid	98.46	98.46
TraesCS4D01G194800.1	Wheat	plastid	97.84	97.24
HORVU4Hr1G056100.1	Barley	mitochondrion	95.99	88.35
Os03t0292200-01	Rice	peroxisome	84.26	86.12
EER95032	Sorghum	plastid	85.49	83.18
GSMUA_Achr7P15600_001	Banana	mitochondrion	47.53	81.05
AT5G01340.1	Thale cress	cytosol, mitochondrion, plastid	75.0	78.64
VIT_08s0217g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	73.46	77.78
GSMUA_Achr10P...	Banana	cytosol	53.7	77.68
KRH16814	Soybean	cytosol	74.07	75.95
Zm00001d028753_P003	Maize	plastid	85.19	75.41
CDY11206	Canola	cytosol	75.62	72.49
PGSC0003DMT400028643	Potato	cytosol, mitochondrion, nucleus	74.07	69.36
KRH72424	Soybean	cytosol	73.15	69.3
Bra005690.1-P	Field mustard	cytosol	75.62	60.79
CDX80777	Canola	cytosol	75.0	59.85
TraesCS3B01G231700.3	Wheat	plasma membrane	21.91	24.83
TraesCS3B01G177000.1	Wheat	cytosol	24.69	24.69
TraesCS4B01G139600.1	Wheat	cytosol	23.15	24.67
TraesCS1B01G206900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	22.53	24.66
TraesCS1B01G206800.1	Wheat	cytosol, mitochondrion, plastid	22.84	23.64
TraesCS3B01G153900.1	Wheat	golgi	21.6	22.88
TraesCS1B01G142400.1	Wheat	cytosol, extracellular, peroxisome	20.99	22.52
TraesCS4B01G307000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	20.99	22.22
TraesCS5B01G243600.1	Wheat	cytosol	21.3	21.36
TraesCS2B01G335300.1	Wheat	mitochondrion	19.44	20.79
TraesCS5B01G300300.2	Wheat	cytosol	20.68	20.62
TraesCS5B01G102500.1	Wheat	mitochondrion	15.74	16.78

Protein Annotations

EnsemblPlants:TraesCS4B01G193900.1	EnsemblPlantsGene:TraesCS4B01G193900	Gene3D:1.50.40.10	GO:GO:0006810	GO:GO:0008150	GO:GO:0055085
InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PANTHER:PTHR24089
PANTHER:PTHR24089:SF396	PFAM:PF00153	PFscan:PS50920	PRINTS:PR00926	SEG:seg	SUPFAM:SSF103506
MapMan:24.2.13	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:416640271..416643553

Molecular Weight (calculated)

34821.8 Da

IEP (calculated)

10.389

GRAVY (calculated)

-0.028

Length

324 amino acids

Sequence
(BLAST)

001: MASPPSPPPP SPPARADEPR SGEGRAPIPP YVKAAAGSLG GVMEACCLQP IDVVKTRLQL DRAGVYRGIA HCGTTVARAE GVPALWKGLT PFATHLTLKY
101: ALRLGSNAML QSAFKDPVTG KVSAQGRLAS GFGAGVLEAL IIVTPFEVVK IRLQQQKGLS TDLLKYKGPI HCAKTIVREE GIFGLWSGAS PTVMRNGTNQ
201: AAMFTAKNTI DILLWKKHEG DGKVLQPWQS MVSGFLAGTA GPICTGPFDV VKTRLMAQGR TGDIKYKGMF HAIRTIHAEE GLRALWKGLL PRLMRIPPGQ
301: AIMWTVADQV MGLYERTYLQ SAQV

Best Arabidopsis Sequence Match ( AT5G01340.1 )
(BLAST)

001: MATRTESKKQ IPPYMKAVSG SLGGVVEACC LQPIDVIKTR LQLDRVGAYK GIAHCGSKVV RTEGVRALWK GLTPFATHLT LKYTLRMGSN AMFQTAFKDS
101: ETGKVSNRGR FLSGFGAGVL EALAIVTPFE VVKIRLQQQK GLSPELFKYK GPIHCARTIV REESILGLWS GAAPTVMRNG TNQAVMFTAK NAFDILLWNK
201: HEGDGKILQP WQSMISGFLA GTAGPFCTGP FDVVKTRLMA QSRDSEGGIR YKGMVHAIRT IYAEEGLVAL WRGLLPRLMR IPPGQAIMWA VADQVTGLYE
301: MRYLRNAPL

Arabidopsis Description

SFC1Mitochondrial succinate-fumarate transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M038]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.