Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11206 | Canola | cytosol | 92.56 | 84.62 |
| GSMUA_Achr7P15600_001 | Banana | mitochondrion | 50.81 | 82.63 |
| VIT_08s0217g00010.t01 | Wine grape | cytosol, mitochondrion, nucleus | 80.91 | 81.7 |
| GSMUA_Achr10P... | Banana | cytosol | 57.28 | 79.02 |
| KRH16814 | Soybean | cytosol | 79.61 | 77.85 |
| Os03t0292200-01 | Rice | peroxisome | 79.29 | 77.29 |
| TraesCS4B01G193900.1 | Wheat | plastid | 78.64 | 75.0 |
| TraesCS4A01G110200.1 | Wheat | plastid | 78.64 | 75.0 |
| TraesCS4D01G194800.1 | Wheat | plastid | 78.96 | 74.85 |
| EER95032 | Sorghum | plastid | 78.32 | 72.67 |
| PGSC0003DMT400028643 | Potato | cytosol, mitochondrion, nucleus | 80.26 | 71.68 |
| Bra005690.1-P | Field mustard | cytosol | 92.88 | 71.22 |
| CDX80777 | Canola | cytosol | 92.88 | 70.69 |
| KRH72424 | Soybean | cytosol | 77.35 | 69.88 |
| HORVU4Hr1G056100.1 | Barley | mitochondrion | 78.96 | 69.32 |
| Zm00001d028753_P003 | Maize | plastid | 77.99 | 65.85 |
| AT5G46800.2 | Thale cress | cytosol | 24.92 | 25.67 |
| AT1G79900.1 | Thale cress | cytosol | 23.95 | 25.0 |
| AT4G24570.1 | Thale cress | cytosol | 24.6 | 24.28 |
| AT3G54110.1 | Thale cress | cytosol, plasma membrane | 23.3 | 23.53 |
| AT5G19760.1 | Thale cress | cytosol | 22.65 | 23.49 |
| AT2G22500.1 | Thale cress | cytosol | 23.3 | 23.0 |
| AT1G14140.1 | Thale cress | mitochondrion | 21.68 | 21.97 |
| AT4G03115.3 | Thale cress | cytosol | 24.27 | 21.68 |
| AT5G09470.1 | Thale cress | extracellular, plasma membrane | 22.98 | 21.07 |
| AT2G33820.3 | Thale cress | cytosol, mitochondrion, plastid | 21.68 | 21.0 |
| AT5G58970.1 | Thale cress | endoplasmic reticulum, vacuole | 20.06 | 20.33 |
Protein Annotations
| Gene3D:1.50.40.10 | MapMan:24.2.13 | EntrezGene:831479 | ProteinID:AED90329.1 | ArrayExpress:AT5G01340 | EnsemblPlantsGene:AT5G01340 |
| RefSeq:AT5G01340 | TAIR:AT5G01340 | RefSeq:AT5G01340-TAIR-G | EnsemblPlants:AT5G01340.1 | TAIR:AT5G01340.1 | EMBL:AY052716 |
| EMBL:AY087702 | EMBL:AY098957 | ProteinID:CAB81917.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 | GO:GO:0006810 |
| GO:GO:0006839 | GO:GO:0008150 | GO:GO:0015141 | GO:GO:0015741 | GO:GO:0015744 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0071422 | InterPro:IPR018108 | InterPro:IPR023395 | InterPro:Mitochondrial_sb/sol_carrier | InterPro:Mt_carrier_dom_sf |
| RefSeq:NP_195754.1 | PFAM:PF00153 | PO:PO:0000013 | PO:PO:0000025 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50920 | PANTHER:PTHR24089 | PANTHER:PTHR24089:SF396 | UniProt:Q9M038 | SUPFAM:SSF103506 | UniParc:UPI0000048D1E |
Description
SFC1Mitochondrial succinate-fumarate transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M038]
Coordinates
chr5:-:143055..144863
Molecular Weight (calculated)
33992.9 Da
IEP (calculated)
10.485
GRAVY (calculated)
-0.026
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRTESKKQ IPPYMKAVSG SLGGVVEACC LQPIDVIKTR LQLDRVGAYK GIAHCGSKVV RTEGVRALWK GLTPFATHLT LKYTLRMGSN AMFQTAFKDS
101: ETGKVSNRGR FLSGFGAGVL EALAIVTPFE VVKIRLQQQK GLSPELFKYK GPIHCARTIV REESILGLWS GAAPTVMRNG TNQAVMFTAK NAFDILLWNK
201: HEGDGKILQP WQSMISGFLA GTAGPFCTGP FDVVKTRLMA QSRDSEGGIR YKGMVHAIRT IYAEEGLVAL WRGLLPRLMR IPPGQAIMWA VADQVTGLYE
301: MRYLRNAPL
101: ETGKVSNRGR FLSGFGAGVL EALAIVTPFE VVKIRLQQQK GLSPELFKYK GPIHCARTIV REESILGLWS GAAPTVMRNG TNQAVMFTAK NAFDILLWNK
201: HEGDGKILQP WQSMISGFLA GTAGPFCTGP FDVVKTRLMA QSRDSEGGIR YKGMVHAIRT IYAEEGLVAL WRGLLPRLMR IPPGQAIMWA VADQVTGLYE
301: MRYLRNAPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.