Factsheet for Zm00001d028753_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95032	Sorghum	plastid	87.7	96.4
Os03t0292200-01	Rice	peroxisome	78.96	91.17
TraesCS4A01G110200.1	Wheat	plastid	76.23	86.11
TraesCS4D01G194800.1	Wheat	plastid	76.23	85.58
TraesCS4B01G193900.1	Wheat	plastid	75.41	85.19
GSMUA_Achr7P15600_001	Banana	mitochondrion	42.08	81.05
HORVU4Hr1G056100.1	Barley	mitochondrion	77.32	80.4
GSMUA_Achr10P...	Banana	cytosol	48.36	79.02
VIT_08s0217g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	65.57	78.43
AT5G01340.1	Thale cress	cytosol, mitochondrion, plastid	65.85	77.99
KRH16814	Soybean	cytosol	65.3	75.63
CDY11206	Canola	cytosol	66.12	71.6
PGSC0003DMT400028643	Potato	cytosol, mitochondrion, nucleus	65.85	69.65
KRH72424	Soybean	cytosol	64.75	69.3
Bra005690.1-P	Field mustard	cytosol	66.12	60.05
CDX80777	Canola	cytosol	65.85	59.36
Zm00001d048583_P001	Maize	mitochondrion	21.31	25.16
Zm00001d023895_P007	Maize	mitochondrion	20.22	24.83
Zm00001d024951_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	19.67	23.76
Zm00001d010020_P001	Maize	mitochondrion	8.74	23.7
Zm00001d037725_P001	Maize	plastid	19.4	23.05
Zm00001d037727_P001	Maize	plastid	19.4	22.83
Zm00001d008974_P001	Maize	cytosol	20.77	22.69
Zm00001d004561_P001	Maize	plasma membrane	17.49	22.15
Zm00001d032430_P002	Maize	mitochondrion	18.31	21.9
Zm00001d031833_P001	Maize	mitochondrion	19.13	21.47
Zm00001d003511_P001	Maize	mitochondrion	17.21	20.72

Protein Annotations

Gene3D:1.50.40.10	EntrezGene:100191274	MapMan:24.2.13	UniProt:A0A1D6JZE3	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015141	GO:GO:0015744	GO:GO:0016020
GO:GO:0016021	GO:GO:0071422	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
ProteinID:ONL96961.1	PFAM:PF00153	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF396	SUPFAM:SSF103506
UniParc:UPI0008453638	EnsemblPlantsGene:Zm00001d028753	EnsemblPlants:Zm00001d028753_P003	EnsemblPlants:Zm00001d028753_T003	SEG:seg	:

Description

Mitochondrial succinate-fumarate transporter 1

Coordinates

chr1:+:45572061..45574400

Molecular Weight (calculated)

39145.0 Da

IEP (calculated)

10.664

GRAVY (calculated)

0.034

Length

366 amino acids

Sequence
(BLAST)

001: MASTSSSSPQ PPPAAAAASP GAASSPEDRR AGGGRGGPPP VPPYVKAAAG SLGGVMEACC LQPIDVVKTR LQLDRTGAYR GIAHCGATVA RAEGVRALWK
101: GLTPFATHLT LKYALRLGSN AVLQSAFKDP TTGKVSAHGR LASGFGAGVI EALLIVTPFE ARLNISLFLS RSLTILPWLR VNLIMTENEV VKIRLQQQKG
201: LSPDLLRYKG PIHCARTIVR EEGLFGLWSG ALPTVMRNGT NQAAMFSAKN TFDIVLWKKH EGDGKVLLPW QSMVSGFLAG TAGPVCTGPF DVVKTRLMAQ
301: GRTGDAKYKG MVHAIRTIYA EEGLRALWKG LLPRLMRIPP GQAIMWAVAD QVMGLYERTH LQPVHI

Best Arabidopsis Sequence Match ( AT5G01340.1 )
(BLAST)

001: MATRTESKKQ IPPYMKAVSG SLGGVVEACC LQPIDVIKTR LQLDRVGAYK GIAHCGSKVV RTEGVRALWK GLTPFATHLT LKYTLRMGSN AMFQTAFKDS
101: ETGKVSNRGR FLSGFGAGVL EALAIVTPFE VVKIRLQQQK GLSPELFKYK GPIHCARTIV REESILGLWS GAAPTVMRNG TNQAVMFTAK NAFDILLWNK
201: HEGDGKILQP WQSMISGFLA GTAGPFCTGP FDVVKTRLMA QSRDSEGGIR YKGMVHAIRT IYAEEGLVAL WRGLLPRLMR IPPGQAIMWA VADQVTGLYE
301: MRYLRNAPL

Arabidopsis Description

SFC1Mitochondrial succinate-fumarate transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M038]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.