Factsheet for PGSC0003DMT400028643

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0217g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	73.12	82.68
GSMUA_Achr7P15600_001	Banana	mitochondrion	45.09	82.11
AT5G01340.1	Thale cress	cytosol, mitochondrion, plastid	71.68	80.26
KRH16814	Soybean	cytosol	72.83	79.75
GSMUA_Achr10P...	Banana	cytosol	50.87	78.57
Os03t0292200-01	Rice	peroxisome	69.65	76.03
TraesCS4A01G110200.1	Wheat	plastid	69.65	74.38
TraesCS4D01G194800.1	Wheat	plastid	69.94	74.23
TraesCS4B01G193900.1	Wheat	plastid	69.36	74.07
KRH72424	Soybean	cytosol	72.25	73.1
CDY11206	Canola	cytosol	71.39	73.08
EER95032	Sorghum	plastid	68.79	71.47
HORVU4Hr1G056100.1	Barley	mitochondrion	70.23	69.03
Zm00001d028753_P003	Maize	plastid	69.65	65.85
Bra005690.1-P	Field mustard	cytosol	71.68	61.54
CDX80777	Canola	cytosol	71.68	61.08
PGSC0003DMT400005377	Potato	cytosol	21.97	25.94
PGSC0003DMT400042642	Potato	cytosol	23.41	25.71
PGSC0003DMT400014293	Potato	cytosol, mitochondrion, plastid	21.68	25.34
PGSC0003DMT400047378	Potato	cytosol	21.1	25.26
PGSC0003DMT400021041	Potato	cytosol, mitochondrion, plastid	21.68	25.25
PGSC0003DMT400019719	Potato	cytosol	6.07	24.42
PGSC0003DMT400037834	Potato	cytosol	22.25	24.29
PGSC0003DMT400081953	Potato	cytosol, peroxisome, plastid	20.23	23.57
PGSC0003DMT400058719	Potato	cytosol, mitochondrion, nucleus	20.23	22.95
PGSC0003DMT400041633	Potato	cytosol	21.39	22.84
PGSC0003DMT400052443	Potato	vacuole	19.65	20.8
PGSC0003DMT400076450	Potato	cytosol, endoplasmic reticulum, mitochondrion	19.08	20.18
PGSC0003DMT400043390	Potato	cytosol, plastid	21.39	17.75

Protein Annotations

EnsemblPlants:PGSC0003DMT400028643	EnsemblPlantsGene:PGSC0003DMG400011025	EntrezGene:102578357	Gene3D:1.50.40.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PANTHER:PTHR24089
PANTHER:PTHR24089:SF396	PFAM:PF00153	PFscan:PS50920	PGSC:PGSC0003DMG400011025	SEG:seg	SUPFAM:SSF103506
UniParc:UPI000295C442	UniProt:M1ARF8	MapMan:24.2.13	:	:	:

Description

Mitochondrial substrate carrier family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011025]

Coordinates

chr10:-:53835600..53839966

Molecular Weight (calculated)

38005.8 Da

IEP (calculated)

10.245

GRAVY (calculated)

0.013

Length

346 amino acids

Sequence
(BLAST)

001: MAEENSRSKK TIPPYMKAIS GSLGGIVEAS CLQPIDVIKT RLQLDRAGAY KGIVHCGSTI VNNEGVRALW KGLTPFATHL TLKYALRMGS NAVFQTAFKD
101: SETGKLSPQG RLMAGFGAGV LEALVIVTPF ELISVTVEPK QILFDSRYFS FLRIMVSGPA CTQCHQQQVV KIRLQQQRGL SPELLRYKGP VHCARMIVRE
201: EGILGLWAGA SPTVMRNGTN QAAMFTAKNA FDTILWKKHE GDGKVLHPWQ SMISGFLAGT AGPICTGPFD VVKTRLMAQS KTVGELKYRG MFHAIATIHA
301: EEGLRALWKG LIPRLMRIPP GQAIMWAVAD QITGFYERTY LTNAPL

Best Arabidopsis Sequence Match ( AT5G01340.1 )
(BLAST)

001: MATRTESKKQ IPPYMKAVSG SLGGVVEACC LQPIDVIKTR LQLDRVGAYK GIAHCGSKVV RTEGVRALWK GLTPFATHLT LKYTLRMGSN AMFQTAFKDS
101: ETGKVSNRGR FLSGFGAGVL EALAIVTPFE VVKIRLQQQK GLSPELFKYK GPIHCARTIV REESILGLWS GAAPTVMRNG TNQAVMFTAK NAFDILLWNK
201: HEGDGKILQP WQSMISGFLA GTAGPFCTGP FDVVKTRLMA QSRDSEGGIR YKGMVHAIRT IYAEEGLVAL WRGLLPRLMR IPPGQAIMWA VADQVTGLYE
301: MRYLRNAPL

Arabidopsis Description

SFC1Mitochondrial succinate-fumarate transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M038]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.