CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0292200-01	Rice	peroxisome	87.39	91.8
Zm00001d028753_P003	Maize	plastid	96.4	87.7
TraesCS4A01G110200.1	Wheat	plastid	84.08	86.42
TraesCS4D01G194800.1	Wheat	plastid	84.08	85.89
TraesCS4B01G193900.1	Wheat	plastid	83.18	85.49
GSMUA_Achr7P15600_001	Banana	mitochondrion	46.55	81.58
HORVU4Hr1G056100.1	Barley	mitochondrion	85.29	80.68
GSMUA_Achr10P...	Banana	cytosol	52.85	78.57
AT5G01340.1	Thale cress	cytosol, mitochondrion, plastid	72.67	78.32
VIT_08s0217g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	70.87	77.12
KRH16814	Soybean	cytosol	71.47	75.32
CDY11206	Canola	cytosol	72.67	71.6
KRH72424	Soybean	cytosol	70.87	69.01
PGSC0003DMT400028643	Potato	cytosol, mitochondrion, nucleus	71.47	68.79
Bra005690.1-P	Field mustard	cytosol	72.67	60.05
CDX80777	Canola	cytosol	72.37	59.36
EER91889	Sorghum	cytosol	22.52	25.34
KXG23597	Sorghum	mitochondrion	22.52	25.17
KXG25746	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	21.62	24.41
EES17872	Sorghum	cytosol, extracellular, peroxisome, plastid	21.62	23.38
EES15143	Sorghum	cytosol	21.92	22.19
KXG31527	Sorghum	cytosol, nucleus, peroxisome	23.12	21.75
KXG38173	Sorghum	cytosol, extracellular, mitochondrion	19.82	21.57
KXG26414	Sorghum	plastid	18.92	21.0
OQU84127	Sorghum	golgi, plasma membrane, plastid	22.82	19.95

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	EntrezGene:8081428	UniProt:C5WNI5	EnsemblPlants:EER95032	ProteinID:EER95032
ProteinID:EER95032.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0006839	GO:GO:0008150
GO:GO:0015141	GO:GO:0015741	GO:GO:0015744	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	GO:GO:0071422	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier
InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF396
EnsemblPlantsGene:SORBI_3001G406100	SUPFAM:SSF103506	unigene:Sbi.6849	UniParc:UPI0001A82FE0	RefSeq:XP_002468034.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:69054917..69058162

Molecular Weight (calculated)

35590.5 Da

IEP (calculated)

10.402

GRAVY (calculated)

-0.017

Length

333 amino acids

Sequence
(BLAST)

001: MASTSSSSPQ PPPPAASPGA ASPSEERRAG GGGRPPVPPY VKAAAGSLGG VMEACCLQPI DVVKTRLQLD RTGAYRGIAH CGATVARAEG VRALWKGLTP
101: FATHLTLKYA LRLGSNAVLQ SAFKDPDTGK VSAHGRLASG FGAGVIEALL IVTPFEVVKI RLQQQKGLSP DLLRYKGPIH CARTIVREEG IFGLWSGALP
201: TVMRNGTNQA AMFSAKNTFD IVLWKKHEGD GKVLLPWQSM ISGFLAGTAG PVCTGPFDVV KTRLMAQGRT GDIKYNGMVH AIRTIYSEEG LRALWKGLLP
301: RLMRIPPGQA IMWAVADQVM GLYERTYLQP VHI

Best Arabidopsis Sequence Match ( AT5G01340.1 )
(BLAST)

001: MATRTESKKQ IPPYMKAVSG SLGGVVEACC LQPIDVIKTR LQLDRVGAYK GIAHCGSKVV RTEGVRALWK GLTPFATHLT LKYTLRMGSN AMFQTAFKDS
101: ETGKVSNRGR FLSGFGAGVL EALAIVTPFE VVKIRLQQQK GLSPELFKYK GPIHCARTIV REESILGLWS GAAPTVMRNG TNQAVMFTAK NAFDILLWNK
201: HEGDGKILQP WQSMISGFLA GTAGPFCTGP FDVVKTRLMA QSRDSEGGIR YKGMVHAIRT IYAEEGLVAL WRGLLPRLMR IPPGQAIMWA VADQVTGLYE
301: MRYLRNAPL

Arabidopsis Description

SFC1Mitochondrial succinate-fumarate transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M038]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.