Factsheet for VIT_16s0039g00630.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0827g00030.t01	Wine grape	extracellular	60.74	85.42
KRH58947	Soybean	cytosol	57.78	36.97
VIT_08s0007g07270.t01	Wine grape	cytosol, peroxisome, plastid	62.96	28.52
VIT_06s0004g00470.t01	Wine grape	cytosol	56.3	22.03
VIT_01s0026g02750.t01	Wine grape	cytosol	28.15	13.57
Zm00001d010020_P001	Maize	mitochondrion	13.33	13.33
VIT_06s0004g05940.t01	Wine grape	plasma membrane, vacuole	28.15	12.58
VIT_00s2349g00010.t01	Wine grape	cytosol	29.63	12.58
VIT_18s0001g07320.t01	Wine grape	cytosol	28.89	12.07
VIT_08s0007g01700.t01	Wine grape	extracellular	22.96	10.2
VIT_08s0217g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	20.74	9.15
VIT_07s0104g01160.t01	Wine grape	cytosol	19.26	8.36
VIT_09s0002g04500.t01	Wine grape	cytosol, mitochondrion, plastid	17.04	7.4
VIT_02s0012g01250.t01	Wine grape	mitochondrion, plastid	15.56	6.14
VIT_10s0003g00060.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion	13.33	5.94
VIT_00s0407g00020.t01	Wine grape	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	ProteinID:CCB52942	ProteinID:CCB52942.1	UniProt:F6HJP4	EMBL:FN595787
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0015741
GO:GO:0015744	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR023395
InterPro:Mt_carrier_dom_sf	PANTHER:PTHR24089	PANTHER:PTHR24089:SF427	SUPFAM:SSF103506	UniParc:UPI0002109320	ArrayExpress:VIT_16s0039g00630
EnsemblPlantsGene:VIT_16s0039g00630	EnsemblPlants:VIT_16s0039g00630.t01	:	:	:	:

Description

No Description!

Coordinates

chr16_random:+:321898..322577

Molecular Weight (calculated)

14547.7 Da

IEP (calculated)

10.364

GRAVY (calculated)

-0.107

Length

135 amino acids

Sequence
(BLAST)

001: MTSQISVEVV HDPSDRPVHT TSGVERFVGR NHSPRRLGIK AFHKGLSVGL LRKATYTTAR LGSFKVLTNK VVAANDGKPL PLYEKALCGV IAGAIGATVD
101: SPPDSSLIRM QANATLPAVR CQNYKNAFHA LYCCK

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.