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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • mitochondrion 4
  • cytosol 1
  • plastid 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:peroxisome
plastid: 20363867
plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400081953 Potato cytosol, peroxisome, plastid 97.64 97.64
KRH42853 Soybean endoplasmic reticulum, mitochondrion, nucleus 88.55 87.38
Solyc01g021740.1.1 Tomato cytosol, peroxisome, plastid 34.34 87.18
Bra002259.1-P Field mustard cytosol 75.08 86.1
CDX92503 Canola cytosol 86.53 85.95
CDY44940 Canola cytosol 86.53 85.95
Bra020060.1-P Field mustard cytosol 86.2 85.62
CDY35862 Canola cytosol 86.2 85.62
CDY42293 Canola cytosol 86.2 85.62
AT5G19760.1 Thale cress cytosol 85.86 85.57
Bra006516.1-P Field mustard cytosol 85.86 85.28
CDX88877 Canola cytosol 85.86 85.28
CDX70888 Canola cytosol, extracellular, plastid 69.7 81.18
VIT_06s0004g00470.t01 Wine grape cytosol 86.87 74.78
Solyc05g051400.2.1 Tomato plastid 38.05 37.54
Solyc11g010500.1.1 Tomato cytosol 39.06 35.8
Solyc09g011920.2.1 Tomato plastid 32.32 31.37
Solyc05g007730.2.1 Tomato cytosol 31.31 29.06
Solyc09g031680.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 27.95 28.14
Solyc09g074370.2.1 Tomato cytosol 25.25 26.32
Solyc10g079200.1.1 Tomato plastid 22.56 22.56
Solyc06g061170.2.1 Tomato plastid 17.17 22.27
Solyc03g120100.2.1 Tomato cytosol, endoplasmic reticulum, mitochondrion 19.53 19.33
Solyc06g066680.2.1 Tomato cytosol 19.87 18.73
Solyc10g009090.2.1 Tomato extracellular 16.84 16.39
Solyc02g077910.2.1 Tomato cytosol, endoplasmic reticulum, plastid 14.48 14.33
Protein Annotations
Gene3D:1.50.40.10MapMan:24.2.13MapMan:5.1.1.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005743GO:GO:0006810
GO:GO:0006839GO:GO:0008150GO:GO:0015367GO:GO:0015742GO:GO:0016020GO:GO:0016021
InterPro:IPR018108InterPro:IPR023395UniProt:K4ASC8InterPro:Mitochondrial_sb/sol_carrierInterPro:Mt_carrier_dom_sfPFAM:PF00153
PFscan:PS50920PANTHER:PTHR24089PANTHER:PTHR24089:SF427SUPFAM:SSF103506EnsemblPlantsGene:Solyc01g005620.2EnsemblPlants:Solyc01g005620.2.1
UniParc:UPI0002761CD1SEG:seg::::
Description
Mitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:Projected from Arabidopsis thaliana (AT5G19760) UniProtKB/Swiss-Prot;Acc:Q9C5M0]
Coordinates
chr1:-:430522..435101
Molecular Weight (calculated)
31756.0 Da
IEP (calculated)
9.948
GRAVY (calculated)
0.134
Length
297 amino acids
Sequence
(BLAST)
001: MGEKPKSGGV WPTVKPFVNG GVSGMLATCV IQPIDMIKVR IQLGQGSAAE VTKTMLKNEG FGAFYKGLSA GLLRQATYTT ARLGSFRILT NKAIEANEGK
101: PLPLYQKALC GLTAGAIGAT VGSPADLALI RMQADATLPL AQRRNYTNAF HALSRIAADE GVLALWKGAG PTVVRAMALN MGMLASYDQS VEFFRDNLGM
201: GEAATVVGAS SVSGFFAAAC SLPFDYVKTQ IQKMQPDAEG KLPYTGSFDC AMKTLKTGGP FKFYTGFPVY CVRIAPHVMM TWIFLNQIQK VEKKIGL
Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)
001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM
Arabidopsis Description
DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.