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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 3
  • plasma membrane 2
  • golgi 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:peroxisome
plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400052443 Potato vacuole 95.75 89.6
CDY13183 Canola plasma membrane 76.47 83.27
Bra003170.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 82.68 83.22
CDX67588 Canola cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 82.68 83.22
Bra014840.1-P Field mustard cytosol, peroxisome, plastid 82.68 82.95
CDX76170 Canola cytosol, peroxisome, plastid 82.68 82.95
CDY51585 Canola plasma membrane 82.35 82.89
AT3G54110.1 Thale cress cytosol, plasma membrane 82.68 82.68
Bra007046.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 82.03 82.3
CDX73508 Canola cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 82.03 82.3
CDX78208 Canola cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 82.03 82.3
GSMUA_Achr9P03550_001 Banana cytosol 81.05 81.85
GSMUA_Achr6P33850_001 Banana cytosol 79.41 80.2
Solyc09g031680.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 69.93 72.54
Solyc05g051400.2.1 Tomato plastid 34.97 35.55
Solyc11g010500.1.1 Tomato cytosol 36.6 34.57
Solyc01g005620.2.1 Tomato plastid 31.37 32.32
Solyc05g007730.2.1 Tomato cytosol 32.03 30.62
Solyc09g074370.2.1 Tomato cytosol 26.47 28.42
Solyc01g021740.1.1 Tomato cytosol, peroxisome, plastid 9.8 25.64
Solyc10g079200.1.1 Tomato plastid 23.53 24.24
Solyc06g061170.2.1 Tomato plastid 17.65 23.58
Solyc03g120100.2.1 Tomato cytosol, endoplasmic reticulum, mitochondrion 20.91 21.33
Solyc06g066680.2.1 Tomato cytosol 21.9 21.27
Solyc10g009090.2.1 Tomato extracellular 20.91 20.98
Solyc02g077910.2.1 Tomato cytosol, endoplasmic reticulum, plastid 16.67 17.0
Protein Annotations
Gene3D:1.50.40.10MapMan:2.4.2.3MapMan:24.2.13EMBL:AF472619GO:GO:0003333GO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739
GO:GO:0005743GO:GO:0005773GO:GO:0005774GO:GO:0006810GO:GO:0006839GO:GO:0008150
GO:GO:0008152GO:GO:0009506GO:GO:0009507GO:GO:0009536GO:GO:0009853GO:GO:0009987
GO:GO:0015171GO:GO:0015992GO:GO:0016020GO:GO:0016021GO:GO:0017077GO:GO:0031966
GO:GO:1902600GO:GO:1990542InterPro:IPR018108InterPro:IPR023395InterPro:Mit_uncoupling_UCP-likeInterPro:Mitochondrial_sb/sol_carrier
InterPro:Mt_carrier_dom_sfPFAM:PF00153PRINTS:PR00784PFscan:PS50920PANTHER:PTHR24089PANTHER:PTHR24089:SF622
UniProt:Q8SA58SUPFAM:SSF103506EnsemblPlantsGene:Solyc09g011920.2EnsemblPlants:Solyc09g011920.2.1UniParc:UPI00000A8887SEG:seg
Description
Putative uncoupling protein [Source:UniProtKB/TrEMBL;Acc:Q8SA58]
Coordinates
chr9:+:5178746..5183896
Molecular Weight (calculated)
32444.7 Da
IEP (calculated)
9.818
GRAVY (calculated)
0.144
Length
306 amino acids
Sequence
(BLAST)
001: MGGGDHGGKS DISFAGIFAS SAFAACFAEA CTLPLDTAKV RLQLQKKAVE GDGLGLPKYR GLLGTVGTIA KEEGVASLWK GIVPGLHRQC IYGGLRIGMY
101: EPVKNLYVGK DHVGDVPLSK KILAALTTGA LGITVANPTD LVKVRLQAEG KLPAGVPRRY SGALNAYSTI VKQEGVRALW TGLGPNIGRN AIINAAELAS
201: YDQVKEAVLR IPGFTDNVVT HLIAGLGAGF FAVCIGSPVD VVKSRMMGDS AYKNTLDCFV KTLKNDGPLA FYKGFIPNFG RLGSWNVIMF LTLEQAKKFV
301: KNLESP
Best Arabidopsis Sequence Match ( AT3G54110.1 )
(BLAST)
001: MVAAGKSDLS LPKTFACSAF AACVGEVCTI PLDTAKVRLQ LQKSALAGDV TLPKYRGLLG TVGTIAREEG LRSLWKGVVP GLHRQCLFGG LRIGMYEPVK
101: NLYVGKDFVG DVPLSKKILA GLTTGALGIM VANPTDLVKV RLQAEGKLAA GAPRRYSGAL NAYSTIVRQE GVRALWTGLG PNVARNAIIN AAELASYDQV
201: KETILKIPGF TDNVVTHILS GLGAGFFAVC IGSPVDVVKS RMMGDSGAYK GTIDCFVKTL KSDGPMAFYK GFIPNFGRLG SWNVIMFLTL EQAKKYVREL
301: DASKRN
Arabidopsis Description
PUMP1UCP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V8U1]
SUBAcon: [plasma membrane,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.