Factsheet for Solyc10g079200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021041	Potato	cytosol, mitochondrion, plastid	96.97	96.97
Solyc06g061170.2.1	Tomato	plastid	65.32	84.72
KRH74426	Soybean	cytosol, mitochondrion, vacuole	82.49	82.49
KRH75622	Soybean	cytosol, mitochondrion, vacuole	82.15	82.15
KRH45454	Soybean	cytosol, mitochondrion, vacuole	82.15	82.15
KRH39532	Soybean	cytosol, mitochondrion, plastid	81.48	81.48
GSMUA_Achr5P13930_001	Banana	cytosol	77.44	77.7
AT5G46800.2	Thale cress	cytosol	78.11	77.33
Os10t0573700-01	Rice	mitochondrion	82.15	77.22
CDX87675	Canola	cytosol, mitochondrion, plastid	77.44	77.18
Bra022065.1-P	Field mustard	cytosol, mitochondrion, plastid	77.44	77.18
TraesCS1A01G191900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	76.77	77.03
TraesCS1B01G206900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	76.77	77.03
EER91889	Sorghum	cytosol	76.77	77.03
GSMUA_Achr5P03430_001	Banana	cytosol, mitochondrion, plastid	76.77	77.03
TraesCS1D01G195500.1	Wheat	golgi	76.43	76.69
Os10t0573800-01	Rice	cytosol	76.43	76.69
CDY37150	Canola	cytosol, mitochondrion, plastid	77.44	76.67
Bra017524.1-P	Field mustard	cytosol, mitochondrion, plastid	77.1	76.33
CDY35182	Canola	cytosol, mitochondrion, plastid	77.1	76.33
CDY03190	Canola	cytosol, mitochondrion, plastid	76.77	76.0
GSMUA_Achr4P16910_001	Banana	cytosol, mitochondrion, plastid	76.77	75.75
CDY58507	Canola	cytosol, mitochondrion, plastid	76.09	75.33
Bra024994.1-P	Field mustard	cytosol, mitochondrion, plastid	76.09	75.33
CDX77693	Canola	cytosol, mitochondrion, plastid	75.42	74.67
TraesCS1B01G206800.1	Wheat	cytosol, mitochondrion, plastid	77.44	73.48
VIT_02s0012g01250.t01	Wine grape	mitochondrion, plastid	83.5	72.51
TraesCS1D01G195400.1	Wheat	golgi	77.44	65.34
TraesCS1A01G191800.1	Wheat	endoplasmic reticulum, mitochondrion	77.78	59.69
HORVU1Hr1G050130.3	Barley	vacuole	47.47	43.65
Solyc10g009090.2.1	Tomato	extracellular	35.02	34.1
Solyc06g066680.2.1	Tomato	cytosol	33.33	31.43
Solyc03g120100.2.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion	31.65	31.33
Solyc02g077910.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	30.64	30.33
Solyc09g031680.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	26.6	26.78
Solyc09g011920.2.1	Tomato	plastid	24.24	23.53
Solyc01g005620.2.1	Tomato	plastid	22.56	22.56
Solyc11g010500.1.1	Tomato	cytosol	23.57	21.6
Solyc05g051400.2.1	Tomato	plastid	21.55	21.26
Solyc09g074370.2.1	Tomato	cytosol	20.2	21.05
Solyc05g007730.2.1	Tomato	cytosol	22.56	20.94
Solyc01g021740.1.1	Tomato	cytosol, peroxisome, plastid	6.4	16.24

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	ProteinID:ABO36621.1	ProteinID:ABO36627.1	ProteinID:ABO36628.1	UniProt:B1N662
GO:GO:0000064	GO:GO:0000066	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0006839
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:1903352	InterPro:IPR018108	InterPro:IPR023395
InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF640
SUPFAM:SSF103506	EnsemblPlantsGene:Solyc10g079200.1	EnsemblPlants:Solyc10g079200.1.1	UniParc:UPI000171BD96	SEG:seg	:

Description

Mitochondrial carrier protein [Source:UniProtKB/TrEMBL;Acc:B1N662]

Coordinates

chr10:-:60786451..60787539

Molecular Weight (calculated)

30573.4 Da

IEP (calculated)

9.509

GRAVY (calculated)

0.315

Length

297 amino acids

Sequence
(BLAST)

001: MGDIAKDLTA GTVGGVAQLV VGHPFDTIKV KLQSQPTPLP GQLPKYSGAI DAVRQTLAAE GAGGLFKGMG APLATVAAFN ALLFTVRGQT EAFLRSEPGV
101: PLTVSQQVVC GAVAGTAVSF LACPTELIKC RLQAQGALAS VGSAAVAVKY AGPMDVARHV LRSEGGMMGL FKGLFPTMAR EIPGNAAMFG MYEALKQYFA
201: GGTDTSGLGR GSLIVAGGLA GGSFWISVYP TDVIKSVIQI DDYKNPKFSG FFDAFKKILA SEGVKGLYKG FGPAMGRSVP ANAACFLAYE MAKSSLG

Best Arabidopsis Sequence Match ( AT5G46800.1 )
(BLAST)

001: MADAWKDLAS GTVGGAAQLV VGHPFDTIKV KLQSQPTPAP GQLPRYTGAI DAVKQTVASE GTKGLYKGMG APLATVAAFN AVLFTVRGQM EGLLRSEAGV
101: PLTISQQFVA GAGAGFAVSF LACPTELIKC RLQAQGALAG ASTTSSVVAA VKYGGPMDVA RHVLRSEGGA RGLFKGLFPT FAREVPGNAT MFAAYEAFKR
201: FLAGGSDTSS LGQGSLIMAG GVAGASFWGI VYPTDVVKSV LQVDDYKNPR YTGSMDAFRK ILKSEGVKGL YKGFGPAMAR SVPANAACFL AYEMTRSSLG

Arabidopsis Description

BOUMitochondrial carnitine/acylcarnitine carrier-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93XM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.