Factsheet for Solyc06g061170.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005377	Potato	cytosol	98.69	77.13
Solyc10g079200.1.1	Tomato	plastid	84.72	65.32
KRH45454	Soybean	cytosol, mitochondrion, vacuole	79.91	61.62
KRH75622	Soybean	cytosol, mitochondrion, vacuole	79.48	61.28
GSMUA_Achr5P03430_001	Banana	cytosol, mitochondrion, plastid	78.17	60.47
KRH74426	Soybean	cytosol, mitochondrion, vacuole	77.29	59.6
KRH39532	Soybean	cytosol, mitochondrion, plastid	77.29	59.6
TraesCS1B01G206900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	75.98	58.78
GSMUA_Achr5P13930_001	Banana	cytosol	75.98	58.78
TraesCS1A01G191900.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	75.55	58.45
Os10t0573700-01	Rice	mitochondrion	80.35	58.23
CDX87675	Canola	cytosol, mitochondrion, plastid	75.55	58.05
Bra022065.1-P	Field mustard	cytosol, mitochondrion, plastid	75.55	58.05
CDY03190	Canola	cytosol, mitochondrion, plastid	75.98	58.0
AT5G46800.2	Thale cress	cytosol	75.98	58.0
Os10t0573800-01	Rice	cytosol	74.67	57.77
TraesCS1D01G195500.1	Wheat	golgi	74.67	57.77
Bra017524.1-P	Field mustard	cytosol, mitochondrion, plastid	75.55	57.67
CDY35182	Canola	cytosol, mitochondrion, plastid	75.55	57.67
CDY37150	Canola	cytosol, mitochondrion, plastid	75.55	57.67
GSMUA_Achr4P16910_001	Banana	cytosol, mitochondrion, plastid	75.55	57.48
EER91889	Sorghum	cytosol	73.36	56.76
CDX77693	Canola	cytosol, mitochondrion, plastid	73.36	56.0
CDY58507	Canola	cytosol, mitochondrion, plastid	72.93	55.67
Bra024994.1-P	Field mustard	cytosol, mitochondrion, plastid	72.93	55.67
TraesCS1B01G206800.1	Wheat	cytosol, mitochondrion, plastid	75.55	55.27
VIT_02s0012g01250.t01	Wine grape	mitochondrion, plastid	81.22	54.39
TraesCS1D01G195400.1	Wheat	golgi	75.55	49.15
TraesCS1A01G191800.1	Wheat	endoplasmic reticulum, mitochondrion	75.55	44.7
HORVU1Hr1G050130.3	Barley	vacuole	55.9	39.63
Solyc10g009090.2.1	Tomato	extracellular	34.93	26.23
Solyc03g120100.2.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion	31.88	24.33
Solyc06g066680.2.1	Tomato	cytosol	33.19	24.13
Solyc02g077910.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	26.2	20.0
Solyc09g031680.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	25.33	19.66
Solyc01g021740.1.1	Tomato	cytosol, peroxisome, plastid	9.61	18.8
Solyc09g011920.2.1	Tomato	plastid	23.58	17.65
Solyc05g007730.2.1	Tomato	cytosol	24.02	17.19
Solyc01g005620.2.1	Tomato	plastid	22.27	17.17
Solyc09g074370.2.1	Tomato	cytosol	20.96	16.84
Solyc05g051400.2.1	Tomato	plastid	21.83	16.61
Solyc11g010500.1.1	Tomato	cytosol	22.27	15.74

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	GO:GO:0000064	GO:GO:0000066	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743
GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
GO:GO:1903352	InterPro:IPR018108	InterPro:IPR023395	UniProt:K4C6U7	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier
InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PRINTS:PR00926	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF640
SUPFAM:SSF103506	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g061170.2	EnsemblPlants:Solyc06g061170.2.1	UniParc:UPI000276657F	SEG:seg

Description

No Description!

Coordinates

chr6:+:39178712..39180556

Molecular Weight (calculated)

23720.9 Da

IEP (calculated)

9.578

GRAVY (calculated)

0.320

Length

229 amino acids

Sequence
(BLAST)

001: MGAPLATVAA FNALLFTVRG QTEALLRSEP GAPLTVKQQI LCGAVAGTAA SFLACPTELI KCRLQAHSAL ASVGSASAAI KYTGPMDVAR HVLRSEGGVR
101: GLFKGMCPTL AREVPGNAVM FGVYEALKQY FAGGMDTSGL GRGSLIVAGG LAGGSVWFAV YPTDVIKSVI QVDDYRNAKY SGSFDALKKI LASEGVKGLY
201: KGFGPAITRS IPANAACFLA YEMTRSSLG

Best Arabidopsis Sequence Match ( AT5G46800.1 )
(BLAST)

001: MADAWKDLAS GTVGGAAQLV VGHPFDTIKV KLQSQPTPAP GQLPRYTGAI DAVKQTVASE GTKGLYKGMG APLATVAAFN AVLFTVRGQM EGLLRSEAGV
101: PLTISQQFVA GAGAGFAVSF LACPTELIKC RLQAQGALAG ASTTSSVVAA VKYGGPMDVA RHVLRSEGGA RGLFKGLFPT FAREVPGNAT MFAAYEAFKR
201: FLAGGSDTSS LGQGSLIMAG GVAGASFWGI VYPTDVVKSV LQVDDYKNPR YTGSMDAFRK ILKSEGVKGL YKGFGPAMAR SVPANAACFL AYEMTRSSLG

Arabidopsis Description

BOUMitochondrial carnitine/acylcarnitine carrier-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93XM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.