CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
extracellular 1
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014840.1-P	Field mustard	cytosol, peroxisome, plastid	100.0	100.0
CDY13183	Canola	plasma membrane	91.48	99.29
CDX67588	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	94.43	94.74
CDX73508	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	94.43	94.43
CDX78208	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	94.43	94.43
CDY51585	Canola	plasma membrane	94.1	94.41
AT3G54110.1	Thale cress	cytosol, plasma membrane	93.11	92.81
Solyc09g011920.2.1	Tomato	plastid	82.95	82.68
GSMUA_Achr9P03550_001	Banana	cytosol	78.69	79.21
GSMUA_Achr6P33850_001	Banana	cytosol	78.36	78.88
PGSC0003DMT400052443	Potato	vacuole	80.33	74.92
CDX80317	Canola	endoplasmic reticulum, plasma membrane	69.84	69.84
CDY02849	Canola	plasma membrane	68.2	68.87
CDY32672	Canola	plasma membrane	67.87	68.54
CDY55007	Canola	cytosol, peroxisome, plasma membrane	69.84	58.36
CDX76916	Canola	cytosol	35.74	34.6
CDX89481	Canola	cytosol	35.74	34.38
CDY25603	Canola	cytosol	35.74	34.38
CDY03439	Canola	cytosol, plasma membrane, plastid	35.41	34.29
CDY13754	Canola	cytosol	35.41	34.29
CDY34292	Canola	cytosol, plasma membrane, plastid	35.08	33.97
CDX97871	Canola	cytosol	12.13	33.64
CDY33772	Canola	mitochondrion	33.77	33.44
CDY67400	Canola	plasma membrane	34.1	31.04
CDX81127	Canola	plasma membrane	34.1	31.04
CDX97299	Canola	extracellular	24.59	30.12
CDX91241	Canola	cytosol	28.2	29.66
CDY22103	Canola	cytosol, endoplasmic reticulum, peroxisome, plastid	29.51	28.66
CDX88877	Canola	cytosol	27.87	28.43
CDY21942	Canola	plastid	29.18	28.25
CDY27701	Canola	cytosol	31.48	28.24
CDX92503	Canola	cytosol	27.21	27.76
CDY35862	Canola	cytosol	27.21	27.76
CDY42293	Canola	cytosol	27.21	27.76
CDY44940	Canola	cytosol	27.21	27.76
CDX77693	Canola	cytosol, mitochondrion, plastid	25.9	26.33
CDY58507	Canola	cytosol, mitochondrion, plastid	25.9	26.33
CDX87675	Canola	cytosol, mitochondrion, plastid	24.92	25.5
CDY03190	Canola	cytosol, mitochondrion, plastid	24.92	25.33
CDY37150	Canola	cytosol, mitochondrion, plastid	24.92	25.33
CDY35182	Canola	cytosol, mitochondrion, plastid	24.59	25.0
CDX70888	Canola	cytosol, extracellular, plastid	20.33	24.31
CDY11206	Canola	cytosol	23.28	21.01
CDX87281	Canola	cytosol, mitochondrion, plastid	20.33	19.87
CDY58780	Canola	cytosol, mitochondrion, plastid	20.33	19.87
CDY37683	Canola	cytosol, peroxisome, plastid	19.34	19.41
CDY57210	Canola	cytosol, peroxisome, plastid	19.34	19.41
CDX80777	Canola	cytosol	22.95	17.24
CDX91242	Canola	extracellular	0.98	15.79

Protein Annotations

Gene3D:1.50.40.10	MapMan:2.4.2.3	MapMan:24.2.13	GO:A0A078CH10	EnsemblPlants:CDX76170	ProteinID:CDX76170
ProteinID:CDX76170.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006810	GO:GO:0006839	GO:GO:0008150	GO:GO:0016020	GO:GO:0031966	EnsemblPlantsGene:GSBRNA2T00126470001
InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_uncoupling_UCP-like	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf	PFAM:PF00153
PRINTS:PR00784	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF622	SUPFAM:SSF103506	UniParc:UPI00025450A6

Description

BnaA04g04340D

Coordinates

chrLK031806:-:1567636..1570063

Molecular Weight (calculated)

32706.3 Da

IEP (calculated)

9.921

GRAVY (calculated)

0.152

Length

305 amino acids

Sequence
(BLAST)

001: MVTADSKPDL TLPKTFACSA FAACVGEVCT IPLDTAKVRL QLQKSAIAGD VTLPKYRGLL GTVGTIAREE GLRSLWKGIV PGLHRQCLCG GLRIGMYEPV
101: KNLYVGKDHV GDVPLSKKIL AGLTTGALGI IVANPTDLVK VRLQAEGKLA AGVPKRYTGA LNAYSTIVRQ EGVRALWTGL GPNVARNAII NAAELASYDQ
201: VKQTILKIPG FTDNVVTHIL SGLGAGFFAV CIGSPVDVVK SRMMGDSAYK NTIDCFVKTL QSDGPMAFYK GFIPNFGRLG SWNVIMFLTL EQAKKYVREL
301: ESSKK

Best Arabidopsis Sequence Match ( AT3G54110.1 )
(BLAST)

001: MVAAGKSDLS LPKTFACSAF AACVGEVCTI PLDTAKVRLQ LQKSALAGDV TLPKYRGLLG TVGTIAREEG LRSLWKGVVP GLHRQCLFGG LRIGMYEPVK
101: NLYVGKDFVG DVPLSKKILA GLTTGALGIM VANPTDLVKV RLQAEGKLAA GAPRRYSGAL NAYSTIVRQE GVRALWTGLG PNVARNAIIN AAELASYDQV
201: KETILKIPGF TDNVVTHILS GLGAGFFAVC IGSPVDVVKS RMMGDSGAYK GTIDCFVKTL KSDGPMAFYK GFIPNFGRLG SWNVIMFLTL EQAKKYVREL
301: DASKRN

Arabidopsis Description

PUMP1UCP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V8U1]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.