CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
plastid 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006516.1-P	Field mustard	cytosol	95.29	81.27
CDX88877	Canola	cytosol	95.29	81.27
CDY35862	Canola	cytosol	92.16	78.6
CDY44940	Canola	cytosol	91.76	78.26
CDY42293	Canola	cytosol	91.37	77.93
CDX92503	Canola	cytosol	91.37	77.93
Solyc01g005620.2.1	Tomato	plastid	81.18	69.7
PGSC0003DMT400081953	Potato	cytosol, peroxisome, plastid	80.0	68.69
KRH42853	Soybean	endoplasmic reticulum, mitochondrion, nucleus	80.78	68.44
GSMUA_Achr9P28780_001	Banana	cytosol, peroxisome, plastid	77.25	65.89
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plastid	76.86	65.55
GSMUA_Achr11P...	Banana	cytosol, peroxisome, plastid	76.86	65.55
Os05t0208000-01	Rice	cytosol, extracellular, peroxisome	78.43	65.36
TraesCS1B01G142400.1	Wheat	cytosol, extracellular, peroxisome	77.25	65.23
TraesCS1A01G124600.1	Wheat	golgi, unclear	77.25	65.23
TraesCS1D01G129200.2	Wheat	cytosol, extracellular, peroxisome	77.25	65.23
GSMUA_Achr6P14540_001	Banana	cytosol, mitochondrion, plastid	76.47	65.22
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	76.47	65.0
HORVU1Hr1G028720.1	Barley	cytosol, extracellular, peroxisome	76.86	64.9
Zm00001d037725_P001	Maize	plastid	76.86	63.64
EES17872	Sorghum	cytosol, extracellular, peroxisome, plastid	76.86	63.64
Os11t0432400-01	Rice	cytosol	76.86	63.43
Zm00001d037727_P001	Maize	plastid	77.25	63.34
HORVU3Hr1G025820.1	Barley	plasma membrane	75.69	63.07
TraesCS3B01G153900.1	Wheat	golgi	75.29	62.75
TraesCS3D01G136800.1	Wheat	golgi	75.29	62.54
TraesCS3A01G135800.1	Wheat	cytosol	74.9	62.42
VIT_06s0004g00470.t01	Wine grape	cytosol	76.47	56.52
CDY34292	Canola	cytosol, plasma membrane, plastid	36.47	29.52
CDY03439	Canola	cytosol, plasma membrane, plastid	36.08	29.21
CDY25603	Canola	cytosol	34.12	27.44
CDY13754	Canola	cytosol	33.73	27.3
CDX89481	Canola	cytosol	33.73	27.13
CDX76916	Canola	cytosol	33.33	26.98
CDX81127	Canola	plasma membrane	34.12	25.97
CDY67400	Canola	plasma membrane	33.73	25.67
CDX97871	Canola	cytosol	10.59	24.55
CDY33772	Canola	mitochondrion	29.02	24.03
CDY32672	Canola	plasma membrane	28.24	23.84
CDY02849	Canola	plasma membrane	27.84	23.51
CDX80317	Canola	endoplasmic reticulum, plasma membrane	27.45	22.95
CDX67588	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	25.88	21.71
CDY51585	Canola	plasma membrane	25.88	21.71
CDY13183	Canola	plasma membrane	23.92	21.71
CDX78208	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	25.1	20.98
CDX73508	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	25.1	20.98
CDX76170	Canola	cytosol, peroxisome, plastid	24.31	20.33
CDY27701	Canola	cytosol	27.06	20.29
CDY55007	Canola	cytosol, peroxisome, plasma membrane	28.63	20.0
CDY21942	Canola	plastid	23.53	19.05
CDY22103	Canola	cytosol, endoplasmic reticulum, peroxisome, plastid	23.14	18.79
CDX97299	Canola	extracellular	17.25	17.67
CDX91241	Canola	cytosol	19.61	17.24
CDY03190	Canola	cytosol, mitochondrion, plastid	19.61	16.67
CDX87675	Canola	cytosol, mitochondrion, plastid	19.22	16.44
CDY35182	Canola	cytosol, mitochondrion, plastid	19.22	16.33
CDY37150	Canola	cytosol, mitochondrion, plastid	19.22	16.33
CDY58507	Canola	cytosol, mitochondrion, plastid	18.82	16.0
CDY37683	Canola	cytosol, peroxisome, plastid	18.82	15.79
CDX91242	Canola	extracellular	1.18	15.79
CDY11206	Canola	cytosol	20.78	15.68
CDX77693	Canola	cytosol, mitochondrion, plastid	18.43	15.67
CDY57210	Canola	cytosol, peroxisome, plastid	18.43	15.46
CDX80777	Canola	cytosol	21.18	13.3
CDX87281	Canola	cytosol, mitochondrion, plastid	16.08	13.14
CDY58780	Canola	cytosol, mitochondrion, plastid	16.08	13.14

Protein Annotations

EnsemblPlants:CDX70888	EnsemblPlantsGene:GSBRNA2T00140789001	Gene3D:1.50.40.10	GO:A0A078C769	GO:GO:0006810	GO:GO:0008150
GO:GO:0055085	InterPro:IPR018108	InterPro:IPR023395	InterPro:Mit_carrier	InterPro:Mitochondrial_sb/sol_carrier	InterPro:Mt_carrier_dom_sf
PANTHER:PTHR24089	PANTHER:PTHR24089:SF427	PFAM:PF00153	PFscan:PS50920	PRINTS:PR00926	ProteinID:CDX70888
ProteinID:CDX70888.1	SUPFAM:SSF103506	UniParc:UPI0004EE12FA	MapMan:5.1.1.1	MapMan:24.2.13	:

Description

BnaC03g09720D

Coordinates

chrLK031791:-:2593939..2595988

Molecular Weight (calculated)

27267.5 Da

IEP (calculated)

9.216

GRAVY (calculated)

0.241

Length

255 amino acids

Sequence
(BLAST)

001: MAEEKKVAPI GIWTAVKPFV NGGASGMLAT CVIQPIDMIK VRIQLGQGSA ASVTTTMLKN EGIGAFYKFV VDLSNLLRQA TYTTARLGSF KMLTAKASEA
101: NDGKPLPLYQ KALCGLTAGA IGACVGSPAD LALIRMQADN TLPLAQRRNY TNAFHALLPA MALNTGMLAS YDQSAEYMRD NLGLGETSTV VGASAVLGFC
201: AAACSLPFDF VKTQIQKMQP DAQGFPVYCV RIAPHVMVTW IFLNQITKFQ KNIGM

Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)

001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM

Arabidopsis Description

DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.