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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus

Predictor Summary:
  • nucleus 1
  • mitochondrion 4
  • cytosol 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, mitochondrion, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
 nucleus: 21132161
mitochondrion: 21766870
extracellular: 25724908
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 21766870 doi
S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 25724908 doi
VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith
From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH58947 Soybean cytosol 67.77 96.68
Solyc01g005620.2.1 Tomato plastid 87.38 88.55
PGSC0003DMT400081953 Potato cytosol, peroxisome, plastid 86.38 87.54
Bra002259.1-P Field mustard cytosol 74.09 86.1
CDX92503 Canola cytosol 84.72 85.28
CDX88877 Canola cytosol 84.39 84.95
CDY35862 Canola cytosol 84.39 84.95
CDY44940 Canola cytosol 84.39 84.95
Bra006516.1-P Field mustard cytosol 84.39 84.95
GSMUA_Achr6P14540_001 Banana cytosol, mitochondrion, plastid 84.39 84.95
GSMUA_Achr10P... Banana cytosol, mitochondrion, plastid 84.39 84.67
CDY42293 Canola cytosol 84.05 84.62
Bra020060.1-P Field mustard cytosol 84.05 84.62
AT5G19760.1 Thale cress cytosol 83.72 84.56
GSMUA_Achr11P... Banana cytosol, peroxisome, plastid 83.72 84.28
GSMUA_Achr9P28780_001 Banana cytosol, peroxisome, plastid 83.39 83.95
GSMUA_Achr10P... Banana cytosol, peroxisome, plastid 83.06 83.61
TraesCS1D01G129200.2 Wheat cytosol, extracellular, peroxisome 82.39 82.12
TraesCS1B01G142400.1 Wheat cytosol, extracellular, peroxisome 82.39 82.12
TraesCS1A01G124600.1 Wheat golgi, unclear 82.39 82.12
Os05t0208000-01 Rice cytosol, extracellular, peroxisome 83.39 82.03
HORVU1Hr1G028720.1 Barley cytosol, extracellular, peroxisome 82.06 81.79
EES17872 Sorghum cytosol, extracellular, peroxisome, plastid 83.39 81.49
Zm00001d037725_P001 Maize plastid 83.06 81.17
CDX70888 Canola cytosol, extracellular, plastid 68.44 80.78
HORVU3Hr1G025820.1 Barley plasma membrane 81.4 80.07
Zm00001d037727_P001 Maize plastid 82.72 80.06
Os11t0432400-01 Rice cytosol 82.06 79.94
TraesCS3B01G153900.1 Wheat golgi 81.06 79.74
TraesCS3D01G136800.1 Wheat golgi 81.06 79.48
TraesCS3A01G135800.1 Wheat cytosol 80.73 79.41
VIT_06s0004g00470.t01 Wine grape cytosol 86.05 75.07
KRH62186 Soybean cytosol 37.54 37.67
KRH74503 Soybean cytosol 39.2 37.22
KRH69658 Soybean cytosol 39.2 37.22
KRH45564 Soybean cytosol 38.54 36.94
KRH52898 Soybean cytosol 16.61 36.76
KRH75799 Soybean plastid 31.56 31.15
KRH66001 Soybean mitochondrion 31.23 30.82
KRH49267 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 30.23 29.84
KRH34619 Soybean cytosol 30.23 29.84
KRG92168 Soybean cytosol, endoplasmic reticulum, mitochondrion 30.23 29.84
KRG98352 Soybean plasma membrane, vacuole 27.57 27.95
KRH00136 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 30.56 27.79
KRH71523 Soybean plastid 28.57 27.13
KRH46454 Soybean endoplasmic reticulum, plasma membrane, vacuole 23.59 26.49
KRH74426 Soybean cytosol, mitochondrion, vacuole 22.59 22.9
KRH45454 Soybean cytosol, mitochondrion, vacuole 22.59 22.9
KRH75622 Soybean cytosol, mitochondrion, vacuole 22.26 22.56
KRH39532 Soybean cytosol, mitochondrion, plastid 22.26 22.56
KRH16814 Soybean cytosol 23.59 22.47
KRH72424 Soybean cytosol 23.92 21.05
KRH47042 Soybean cytosol, mitochondrion, plastid 20.6 20.46
KRH44361 Soybean cytosol, mitochondrion, plastid 19.93 19.8
KRH23460 Soybean cytosol, mitochondrion, plastid 19.27 19.66
KRH09864 Soybean cytosol, mitochondrion, plastid 18.94 19.39
KRH70113 Soybean mitochondrion 7.97 17.52
KRH20413 Soybean cytosol, endoplasmic reticulum, peroxisome 15.28 16.73
KRH50090 Soybean cytosol 16.94 16.72
KRH65469 Soybean extracellular 5.65 13.49
KRH62946 Soybean extracellular 4.65 12.96
Protein Annotations
Gene3D:1.50.40.10EntrezGene:100807439MapMan:24.2.13MapMan:5.1.1.1EMBL:ACUP02004833EnsemblPlantsGene:GLYMA_08G115600
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0005743GO:GO:0006810GO:GO:0006839GO:GO:0008150GO:GO:0015367
GO:GO:0015742GO:GO:0016020GO:GO:0016021UniProt:I1KSD7InterPro:IPR018108InterPro:IPR023395
EnsemblPlants:KRH42853ProteinID:KRH42853ProteinID:KRH42853.1InterPro:Mitochondrial_sb/sol_carrierInterPro:Mt_carrier_dom_sfPFAM:PF00153
PFscan:PS50920PANTHER:PTHR24089PANTHER:PTHR24089:SF427SUPFAM:SSF103506UniParc:UPI0002338F6FSEG:seg
Description
hypothetical protein
Coordinates
chr8:+:8857942..8862688
Molecular Weight (calculated)
31974.9 Da
IEP (calculated)
9.756
GRAVY (calculated)
0.130
Length
301 amino acids
Sequence
(BLAST)
001: MGDENKTKSP ASGVWSTIKP FVNGGASGML ATCVIQPIDM IKVRIQLGQG SAAQVTSTML KNEGVAAFYK GLSAGLLRQA TYTTARLGSF KILTAKAIEA
101: NDGKPLPLYQ KALCGLTAGA IGASVGSPAD LALIRMQADA TLPAAQRRNY TNAFHALYRI TADEGVLALW KGAGPTVVRA MALNMGMLAS YDQSVEFFRD
201: SVGLGEGATV LGASSVSGFF AAACSLPFDY VKTQIQKMQP DADGKYPYTG SVDCAVKTFK AGGPFKFYTG FPVYCVRIAP HVMMTWIFLN QIQKLQKSYG
301: L
Best Arabidopsis Sequence Match ( AT5G19760.1 )
(BLAST)
001: MAEEKKAPIS VWTTVKPFVN GGASGMLATC VIQPIDMIKV RIQLGQGSAA SITTNMLKNE GVGAFYKGLS AGLLRQATYT TARLGSFKLL TAKAIESNDG
101: KPLPLYQKAL CGLTAGAIGA CVGSPADLAL IRMQADNTLP LAQRRNYTNA FHALTRISAD EGVLALWKGC GPTVVRAMAL NMGMLASYDQ SAEYMRDNLG
201: FGEMSTVVGA SAVSGFCAAA CSLPFDFVKT QIQKMQPDAQ GKYPYTGSLD CAMKTLKEGG PLKFYSGFPV YCVRIAPHVM MTWIFLNQIT KFQKKIGM
Arabidopsis Description
DTCMitochondrial dicarboxylate/tricarboxylate transporter DTC [Source:UniProtKB/Swiss-Prot;Acc:Q9C5M0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.