Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG22678 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35050.1 | KXG22678 | AT4G05420.1 | 18223036 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022614_P001 | Maize | cytosol | 94.04 | 94.04 |
| TraesCS5A01G331900.1 | Wheat | cytosol | 81.89 | 81.48 |
| Os09t0540600-01 | Rice | cytosol | 82.63 | 81.22 |
| TraesCS5B01G332200.1 | Wheat | cytosol | 81.64 | 80.64 |
| TraesCS5D01G337800.1 | Wheat | cytosol | 80.65 | 80.45 |
| HORVU2Hr1G092350.1 | Barley | cytosol | 27.3 | 79.14 |
| HORVU5Hr1G084160.2 | Barley | cytosol | 76.92 | 73.99 |
| GSMUA_Achr8P33950_001 | Banana | nucleus | 64.02 | 63.86 |
| GSMUA_Achr1P26410_001 | Banana | nucleus | 63.28 | 62.65 |
| VIT_03s0038g02430.t01 | Wine grape | cytosol | 56.58 | 56.86 |
| PGSC0003DMT400015787 | Potato | cytosol | 56.33 | 56.33 |
| Solyc01g111590.2.1 | Tomato | cytosol | 55.83 | 55.83 |
| KRH29002 | Soybean | nucleus | 54.59 | 54.59 |
| KRH24317 | Soybean | nucleus | 53.6 | 53.87 |
| Bra037289.1-P | Field mustard | cytosol | 53.6 | 52.3 |
| CDY26787 | Canola | cytosol | 53.6 | 52.17 |
| CDY47479 | Canola | cytosol | 53.6 | 52.17 |
| Bra001997.1-P | Field mustard | nucleus | 52.61 | 50.72 |
| AT2G16780.1 | Thale cress | cytosol | 52.11 | 50.6 |
| AT4G35050.1 | Thale cress | cytosol | 52.11 | 49.53 |
| CDY70131 | Canola | cytosol | 23.82 | 45.93 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 53.1 | 35.2 |
| EES01357 | Sorghum | nucleus | 30.77 | 27.37 |
| EES04830 | Sorghum | cytosol, peroxisome, plastid | 18.61 | 23.36 |
| OQU82815 | Sorghum | mitochondrion | 24.32 | 21.35 |
| EES15567 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 25.31 | 21.29 |
Protein Annotations
| MapMan:12.2.1.3 | Gene3D:2.130.10.10 | EntrezGene:8067288 | UniProt:C5X6W6 | EnsemblPlants:EER97107 | ProteinID:EER97107 |
| ProteinID:EER97107.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12265 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF137 | SMART:SM00320 | EnsemblPlantsGene:SORBI_3002G280700 | SUPFAM:SSF50978 |
| UniParc:UPI0001A83994 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| RefSeq:XP_002460586.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:+:66189304..66193079
Molecular Weight (calculated)
44031.5 Da
IEP (calculated)
4.535
GRAVY (calculated)
-0.264
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGSSTPAS PPPSAAASAA EMEEYRNWKK NAAVLYDLVI SHPLEWPSLT VQWLPSESSA RTHRLVVGTH TSDEAPNNLM VLDAVLPLPP RLAAAAAASC
101: GAVPSPSVSV SCVAPHRGEV NRARCMPQRP YTVATKTCVD EVHVYHLGDG DGSGKSGADV VLRGHEAEGY GLSWSPMKEG WLLSGSYDKK ICLWDLSSGS
201: GAPVLDAQQV FEAHEDLVED VAWHLKDVNI FGSVGDDCKL MMWDLRTNKP EQSIAAHQKE VNSLSFNPFN EWILATASGD ATIKLFDMRK LSRSLHTFDS
301: HEAEVFQVEW NPNLATVLAS SAADKRVMIW DINRIGDEQS EEDADDGPPE LLFVHGGHTA KISELSWNPS EKWVIASVAE NNILQIWEMA ESIYCDDLSM
401: QVN
101: GAVPSPSVSV SCVAPHRGEV NRARCMPQRP YTVATKTCVD EVHVYHLGDG DGSGKSGADV VLRGHEAEGY GLSWSPMKEG WLLSGSYDKK ICLWDLSSGS
201: GAPVLDAQQV FEAHEDLVED VAWHLKDVNI FGSVGDDCKL MMWDLRTNKP EQSIAAHQKE VNSLSFNPFN EWILATASGD ATIKLFDMRK LSRSLHTFDS
301: HEAEVFQVEW NPNLATVLAS SAADKRVMIW DINRIGDEQS EEDADDGPPE LLFVHGGHTA KISELSWNPS EKWVIASVAE NNILQIWEMA ESIYCDDLSM
401: QVN
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.